PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G15070.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 450aa    MW: 49413.7 Da    PI: 4.276
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G15070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.91.7e-11237282247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        WTteE+ +++++ + +G g Wk+I+  +   +t+ q+ s+ qky
  ONIVA06G15070.1 237 RFWTTEEHRQFLRGLRVYGRGEWKSISMNFVRSKTPVQVSSHAQKY 282
                      56*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.601231287IPR017930Myb domain
SuperFamilySSF466894.04E-15233288IPR009057Homeodomain-like
SMARTSM007171.4E-9235285IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-9236284IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-13236285IPR006447Myb domain, plants
PfamPF002493.4E-8239282IPR001005SANT/Myb domain
CDDcd001673.08E-8239283No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MEWTAAEMDE ARSIVARLTN AYDSSALVAG AGNGDTRHDR IVRELQAWFP WRTMDQLIGL  60
YIELMAEEPA AAQPQYFDAG AVVDPTHDRI VRELLAWLPW RTMDQLIGLY IELMAEEPAA  120
AQPQYFDAGA VVDPTFDFFN DHNNFLGMPP PPVQQADDHA MNNVVADAGM NYFYGGAGGG  180
AMVFGGGAPM GETVEQAAPP APAPVPVVPV VMNRDDDEVN NQGGGRHRAA PTNTTRRFWT  240
TEEHRQFLRG LRVYGRGEWK SISMNFVRSK TPVQVSSHAQ KYFRRVESAA ADKQRYSIND  300
VGLNDNDDDD TAAMDGTNSY SNNNFGGWQS LAFAGGHLEP VSGGGAAGQV IAPASSSAAA  360
MNSAAQFWAP MLFNPQIQQQ FMQMQAQTQQ AWNDQHMMMA AAPMEGATDT NFEPAGAGNY  420
YYHQQQEEEE GGAYGVPADQ WMMNQNNNMF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882004.11e-101transcription factor DIVARICATA
TrEMBLA0A0E0HPZ10.0A0A0E0HPZ1_ORYNI; Uncharacterized protein
STRINGONIVA06G15070.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.21e-19MYB family protein