PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G15060.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 399aa    MW: 43554 Da    PI: 4.281
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G15060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.21.4e-11188233247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        WTteE+ +++++ + +G g Wk+I+  +   +t+ q+ s+ qky
  ONIVA06G15060.1 188 RFWTTEEHRQFLRGLRVYGRGEWKSISMNFVRSKTPVQVSSHAQKY 233
                      56*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.601182238IPR017930Myb domain
SuperFamilySSF466893.36E-15184239IPR009057Homeodomain-like
SMARTSM007171.4E-9186236IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-9187235IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-13187236IPR006447Myb domain, plants
CDDcd001672.46E-8190234No hitNo description
PfamPF002492.9E-8190233IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MEWTAAEMDE ARSIVARLTN AYDSGTLVAG AGNGDTRHDR IVRELLAWLP WRTMDQLIGL  60
YIELMAEEPA AAQPQYFDAG AVVDPTFDFF NDHNNFLGIP PPPVQQADDH NMNNVVADAG  120
MNYYYGGGGA GGAMVFGGAP MGETVEQAAP PAPAPVPVVP VVMNRDDDEV NNQGGGRHRA  180
APTNTTRRFW TTEEHRQFLR GLRVYGRGEW KSISMNFVRS KTPVQVSSHA QKYFRRVESA  240
AADKQRYSIN DVGLNDDDDD DTAAMDGTNS YSNNNFGGWQ SLAFAGGHLE PVSGGGAAGQ  300
VIAPASSSAA AMNSAAQFWA PMLFNPQIQQ QFMQMQAQTQ QAWNDQHMMM AAAPMEGATD  360
TNFEPAGAVN YYQQQQEEEG GAYGVPADQW MMNQNNNMF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693466.11e-105PREDICTED: uncharacterized protein LOC107304324
TrEMBLA0A0E0HPZ00.0A0A0E0HPZ0_ORYNI; Uncharacterized protein
STRINGONIVA06G15060.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.23e-21MYB family protein