PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G14620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 364aa MW: 40973.6 Da PI: 8.1798 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28 | 3.8e-09 | 31 | 51 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C+yG+rC++ H+ ONIVA06G14620.1 31 VCTFYQK-GSCSYGSRCRYDHV 51 5******.*************7 PP | |||||||
2 | zf-CCCH | 24.7 | 3.9e-08 | 147 | 168 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa++G C+yG+ C+ +Hg ONIVA06G14620.1 147 PICS-FAAGGNCPYGEECPQMHG 168 6788.*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.756 | 26 | 53 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-5 | 27 | 52 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-5 | 28 | 50 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-5 | 30 | 50 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.8E-7 | 31 | 51 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.713 | 143 | 170 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0012 | 144 | 169 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-5 | 147 | 168 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 2.09E-12 | 200 | 276 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 4.8E-10 | 205 | 271 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 4.38E-4 | 211 | 271 | No hit | No description |
SMART | SM00184 | 2.7E-7 | 212 | 269 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 12.297 | 212 | 270 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 2.0E-7 | 212 | 269 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE pattern | PS00518 | 0 | 236 | 245 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 14.089 | 299 | 328 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0047 | 299 | 327 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 300 | 329 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MSTKRLNKGS AGVACVYFAF LHILVLRTLQ VCTFYQKGSC SYGSRCRYDH VKVSRNPTVA 60 PPPSSSTTTR ASSSLQPLSF GRPHHVGYQA DSSNPRQQIS MDVLAHSGSK PVWRNDFQHE 120 SVLEDGIDWS ISPTVQNQTT LSPADLPICS FAAGGNCPYG EECPQMHGDL CTTCGKMCLH 180 PYRPDEREEH TKLCEKNHKR LESLKRSQEI ECSVCLDRVL SKPTAAERKF GLLSECDHPF 240 CISCIRNWRN NSPTSGMDVN SALRACPICR KLSYYVIPSV LWYFSKEEKL EIIDNYKAKL 300 KSIDCKYFDF GTGTCPFGSS CFYKHAYRDG RLEEVILRHL DADDGSTVIA KNIRLSDFLS 360 RLHL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 201 | 206 | ESLKRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120250 | 0.0 | AK120250.1 Oryza sativa Japonica Group cDNA clone:J013045F22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643585.1 | 0.0 | E3 ubiquitin-protein ligase makorin | ||||
Swissprot | Q5ZA07 | 0.0 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | A0A0E0HPT9 | 0.0 | A0A0E0HPT9_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PX27 | 0.0 | A0A0E0PX27_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G13430.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA06G14620.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5326 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-132 | C3H family protein |
Publications ? help Back to Top | |||
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