PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G13690.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 722aa    MW: 82425 Da    PI: 10.0897
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G13690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.4e-07507547346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE e++ + v++ G+  W + a+++g  +++ ++k+ w+ 
  ONIVA06G13690.1 507 KWTPEEYEKIRRHVEKNGTS-WISLAQELG--KSEIHLKDTWRR 547
                      8*****************99.********8..9*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2431502IPR001005SANT/Myb domain
PROSITE profilePS500903.95434500IPR017877Myb-like domain
SuperFamilySSF466898.58E-7480554IPR009057Homeodomain-like
SMARTSM007170.51504551IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-6506554IPR009057Homeodomain-like
PROSITE profilePS500906.806507549IPR017877Myb-like domain
PfamPF139211.5E-5508551No hitNo description
SMARTSM0071719569635IPR001005SANT/Myb domain
PROSITE profilePS500906.574570633IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-5572652IPR009057Homeodomain-like
SuperFamilySSF466891.92E-6613690IPR009057Homeodomain-like
PROSITE profilePS500907.898635688IPR017877Myb-like domain
SMARTSM0071719639690IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MWKRALGLDF RGSKAAPLAP LSRRPSPSPA IRRSSAVSQR RRTARRHPAP SRGSSLPGWS  60
PRARRTHSSS APRAVTPTMG GEGAERRSKK KEKGKRQEEK AESGSRGDGE AVKLDLATDF  120
PSNSMGKVAM DVEEAKEVHR RKKRKEKEKE KEKDHGKEKK NKVIADNIEE ACAEAEQAEA  180
SGLKVEQHCS EHVQGDMSKC GSEEDKSIKK DNKLMKKKKK KKERKVEMAE EGQILAGSTD  240
ENAGLLHAEM GSGEKEQGKK SKKSKRKHED GEPVADGSAS DEIMTNRDKK RRRKEHSVEL  300
KEGDQVNISK KAVKIKGNKK RKNESDKFNP DLSTDALTGE DKVGGDGKND KRKKKNDTST  360
RRNEVGRDDK NDKKKKKSKE RNGGRKGEKE KAAQSKDKVR RVSFSDAVEV FSINDGEDED  420
NGKSAESEVV HGKRFTPEEN ATLMEAIMSY IEMKQLGENG LEMIRACSKH PELKGCWAEI  480
GKSLPHRPLT AIYKRARILL YRSDERKWTP EEYEKIRRHV EKNGTSWISL AQELGKSEIH  540
LKDTWRRIKP KNLKSVARFC ISIKWKDSLQ SQWTQDEYQN LFDLVNLDLR MKAHQEYDAG  600
NRKLRDNIAW EAISDKLTTR NHKNCCLKWY YQLASPLVQK GIWADTDDYR LVEALQNVDA  660
VCVEDIDWDN LLDHRSGEVC RQRWNEMVRY LGGHKEKPFI EQVEVLSKRY CPEMVDYREG  720
EA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140145RKKRKE
2140146RKKRKEK
3215221KKKKKKK
4216224KKKKKKERK
5288293KKRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643783.10.0RNA polymerase I termination factor isoform X1
TrEMBLA0A0E0HPF50.0A0A0E0HPF5_ORYNI; Uncharacterized protein
STRINGONIVA06G13690.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-94MYB_related family protein