PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G05180.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 392aa    MW: 41460.5 Da    PI: 6.1909
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G05180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.43.1e-28144204259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      dDg++WrKYGqK++ g++fpr+YYrCt++   gCp++k+v+rs+ d  v+++tY+g H+++
  ONIVA06G05180.1 144 DDGFSWRKYGQKDILGAKFPRGYYRCTYRnaqGCPATKQVQRSDADLAVFDVTYQGAHTCH 204
                      8***************************98889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-28132205IPR003657WRKY domain
PROSITE profilePS5081122.768138201IPR003657WRKY domain
SuperFamilySSF1182901.24E-24142205IPR003657WRKY domain
SMARTSM007747.1E-41143205IPR003657WRKY domain
PfamPF031068.9E-27144204IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDGGDIHLLL SILADGEEQA RQLGEPAAAA DDEYHGGGRG EEYYRGVARQ LQGTLARAMG  60
IARAIEAAAF AGGGGGGGAS GSRGTTGDRS DSPRSADESS GRTARDAAVA QQERHHDTIK  120
RRKGLPRWTE KFRVPDASLE ATPDDGFSWR KYGQKDILGA KFPRGYYRCT YRNAQGCPAT  180
KQVQRSDADL AVFDVTYQGA HTCHQKQRRA AAAGDQPPPP PPQADPSVEL LVNFRHGLKV  240
ETNGLAPPPP PPPTTTTNFH DDQHFCFPSM PPFHAGVGPP PPPDDALGGG GCNNFSSPPF  300
VSPAGSAAGE SYFSMEHSYE PRGGGGHFVM SRGDSSELHE VVSAAASSSA VVDPAAAAGG  360
FDYPLYHGEV DPHLPFPPLF GHASMYGQYR DA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-191452011874Disease resistance protein RRS1
5w3x_D9e-191452011874Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419190.0AK241919.1 Oryza sativa Japonica Group cDNA, clone: J075074E04, full insert sequence.
GenBankAK2879850.0AK287985.1 Oryza sativa Japonica Group cDNA, clone: J075093G10, full insert sequence.
GenBankAY6769320.0AY676932.1 Oryza sativa (indica cultivar-group) transcription factor WRKY100 (WRKY100) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643057.10.0probable WRKY transcription factor 30
TrEMBLA0A0E0HLG60.0A0A0E0HLG6_ORYNI; Uncharacterized protein
TrEMBLA0A1V1FI880.0A0A1V1FI88_ORYRU; Putative WRKY20
STRINGONIVA06G05180.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133402730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.19e-38WRKY family protein