PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G03680.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 451aa    MW: 50651.3 Da    PI: 4.3667
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G03680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.77.2e-30371721128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyat.gkrknra.....tksgyWkatg 87 
                      lppG++F Ptdeelv++yL+ k+eg++ +  ++i+e +i++++P++L +k+k+ +e++wyfF+ r+ ++++ ++++nr+     +++g W+atg
  ONIVA06G03680.1  37 LPPGYHFVPTDEELVDFYLRGKIEGRDPPR-RFISEENIMRYDPQKLIEKYKGyGEDRWYFFMVREPSKTKkKDEPNRKvvvdgVEEGSWSATG 129
                      79*************************998.89**************8655553777*****9998776642779999656666679******* PP

              NAM  88 kdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +  +++s+    +++ +g k++L++   +a+++e+  W mhey l
  ONIVA06G03680.1 130 SVVQIHSTketnRKAIIGSKRVLTYK--SARSAENDMWSMHEYVL 172
                      ******9866655666*********9..5666669********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3430189IPR003441NAC domain
PROSITE profilePS5100535.58537189IPR003441NAC domain
PfamPF023651.8E-1838172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MNPTIENGGS GGDGSAAAAA AEGSAIWKSE LVPQLQLPPG YHFVPTDEEL VDFYLRGKIE  60
GRDPPRRFIS EENIMRYDPQ KLIEKYKGYG EDRWYFFMVR EPSKTKKKDE PNRKVVVDGV  120
EEGSWSATGS VVQIHSTKET NRKAIIGSKR VLTYKSARSA ENDMWSMHEY VLAGKSQMGQ  180
YVLCAIQLKQ TYEREEKARE EQKNDNKRNK KAARRKNMQQ QPTACQAQDE QQETAPTPGE  240
ETIVDPDQFM DIAHSMHMMF GGVDQDAPPF MPSLIAPCNN DDGMLQLQPL QLQNPNPAML  300
YSNQLEPSYI GDQSMFTPCC CDRNCISCRQ LQFYQQQQAE DGSVAFGEAD LYQQHDRALG  360
NTGVYPDNVW VDGNMADYAQ RQIYNDQDNG GVLMQGPEDS ATFPDNFLML DEMAAGSDDA  420
SGFDYEVDQS MAVVPHVADQ TVDDIMSSLL N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-173219115170NAC domain-containing protein 19
3swm_B4e-173219115170NAC domain-containing protein 19
3swm_C4e-173219115170NAC domain-containing protein 19
3swm_D4e-173219115170NAC domain-containing protein 19
3swp_A4e-173219115170NAC domain-containing protein 19
3swp_B4e-173219115170NAC domain-containing protein 19
3swp_C4e-173219115170NAC domain-containing protein 19
3swp_D4e-173219115170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235260.0AC123526.2 Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBa0059J06, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankBX0004990.0BX000499.1 Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697555.12e-96PREDICTED: putative NAC domain-containing protein 94
TrEMBLA0A0E0HKW60.0A0A0E0HKW6_ORYNI; Uncharacterized protein
STRINGONIVA06G03680.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-22NAC-like, activated by AP3/PI