PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA06G01110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 102aa MW: 11555.1 Da PI: 4.427 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 50.9 | 5.2e-16 | 14 | 99 | 11 | 89 |
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +eel+++yL++k++g + ++e vi+ +diy+v+P +L + + +e + w++ ++r++++ +g r++ +t sg Wka g+ ONIVA06G01110.1 14 EEELICFYLRNKLDGLRDDIECVIPVFDIYSVDPLQLSEihhemlgSGGEEGEPWFYLCPRQEREVRGGRPSWTTPSGSWKAVGTP 99 89***************999888**************854565443222355699***************************9975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 16.554 | 4 | 102 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-6 | 14 | 95 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-17 | 14 | 101 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 102 aa Download sequence Send to blast |
MQTGRITPLD PIHEEELICF YLRNKLDGLR DDIECVIPVF DIYSVDPLQL SEIHHEMLGS 60 GGEEGEPWFY LCPRQEREVR GGRPSWTTPS GSWKAVGTPG VV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK071274 | 1e-118 | AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632691.1 | 6e-46 | NAC domain-containing protein 90 isoform X2 | ||||
Swissprot | Q9FMR3 | 1e-22 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A0E0HJY9 | 4e-69 | A0A0E0HJY9_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA06G01110.1 | 7e-70 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22380.1 | 4e-25 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
---|---|---|---|
|