PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G00530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 215aa MW: 24406.9 Da PI: 10.472 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.1 | 9.6e-28 | 19 | 68 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie++++rqvtfskRr+g+lKKA+ELSvLCdaeva+++fs++g+++ ++s ONIVA06G00530.1 19 RIEDTTRRQVTFSKRRKGLLKKASELSVLCDAEVALLVFSPRGRFFHFAS 68 8*********************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.095 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-24 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-31 | 12 | 69 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 12 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-27 | 13 | 90 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-25 | 19 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.81E-33 | 20 | 79 | No hit | No description |
PRINTS | PR00404 | 1.4E-24 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-24 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MAAAGGQQRR RGGRREMRRI EDTTRRQVTF SKRRKGLLKK ASELSVLCDA EVALLVFSPR 60 GRFFHFASAP SLEGTIDRYI SHTQEAPANK KPRELTVKNM KSQSETLAME IDTVEAYTRA 120 KTWNMLVART AWPGDADGEE PKQHPFTKGK QMQKKLMDKI SQLQQQEKIL SEENALLLDQ 180 GKVQHAPIGA PAREMNQNQH VQDIDVDTEL VIGRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241055 | 0.0 | AK241055.1 Oryza sativa Japonica Group cDNA, clone: J065063N18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642540.1 | 1e-112 | MADS-box transcription factor 50-like isoform X1 | ||||
Refseq | XP_015642541.1 | 1e-112 | MADS-box transcription factor 50-like isoform X1 | ||||
TrEMBL | A0A0E0HJQ9 | 1e-158 | A0A0E0HJQ9_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA06G00530.1 | 1e-159 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17434 | 10 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 1e-29 | AGAMOUS-like 20 |