PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G28480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 279aa MW: 30102.7 Da PI: 5.3619 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 82 | 5.9e-26 | 107 | 167 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 ldDg +WrKYGqK++ g+++pr+Y+rCt++ gC+++k+v+r++ dp +++++Y g+H++ ONIVA05G28480.1 107 LDDGLSWRKYGQKDILGAKYPRAYFRCTHRhtqGCNATKQVQRADGDPLLFDVVYLGDHTC 167 58***************************98999*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.4E-27 | 94 | 169 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.05E-24 | 101 | 169 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.264 | 102 | 165 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-39 | 107 | 169 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.7E-25 | 108 | 167 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MVELCGGEGE GQIMLATELA QLRAMARELE AKMDPDRVAA RELCRALASS VDRSIRLAAS 60 CFPPPEHPPP AAGNAGRDAA FKKRQVMGMA KVRRQVRVTS VQDTASLDDG LSWRKYGQKD 120 ILGAKYPRAY FRCTHRHTQG CNATKQVQRA DGDPLLFDVV YLGDHTCGQA AVAAAAQSAP 180 PEHAGQEQQR QSSLLAAGTE GIHQQVVAEP MAAPFLFTST AAGGVDDGYF SFISPANSDC 240 QFSSDFSAGS VGVDMDHEAR FEDLFSSTLE FFQSEIQNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-22 | 106 | 167 | 7 | 68 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108389 | 0.0 | AK108389.1 Oryza sativa Japonica Group cDNA clone:002-142-F03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638413.1 | 0.0 | probable WRKY transcription factor 41 | ||||
TrEMBL | A0A0E0HIR1 | 0.0 | A0A0E0HIR1_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA05G28480.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3355 | 31 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 3e-33 | WRKY family protein |