PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G23670.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 492aa    MW: 53733.5 Da    PI: 6.5101
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G23670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM836.2e-26201573128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWk.atg 87 
                      +GfrF+P++ e v +yL ++++g++   + +i   ++y++ P++L  +        ++e+ wyf s+rd+ky++gkr++r+t+  +g+Wk +tg
  ONIVA05G23670.1  20 MGFRFKPREAEAVEYYLLPRLQGRPPVPNPAIVVENVYEFAPERLInEkcnggVGGEGEEGWYFLSPRDRKYRNGKRPSRSTEdkAGRWKaSTG 113
                      7************************7666779999**********733455532233777********************887679****5466 PP

              NAM  88 k...dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k   + ++++  g ++ + ++Lv++kg  ++ +kt+W+m e+++
  ONIVA05G23670.1 114 KtegKDPITECYGWVKFCVTSLVYFKGPVKTEKKTKWLMREFTI 157
                      64435678777888999**********99999**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.43418190IPR003441NAC domain
SuperFamilySSF1019414.84E-2919190IPR003441NAC domain
PfamPF023659.1E-1520156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MAGLGKGESS GGGGGGGGEM GFRFKPREAE AVEYYLLPRL QGRPPVPNPA IVVENVYEFA  60
PERLINEKCN GGVGGEGEEG WYFLSPRDRK YRNGKRPSRS TEDKAGRWKA STGKTEGKDP  120
ITECYGWVKF CVTSLVYFKG PVKTEKKTKW LMREFTIPHF ENKLDKTAAA GGSSNQRQLD  180
QYVLCRIYTS PKKGADDGEQ AEVVRGGGGE DIDEWAEACA VFDLGPETAE GSDNADAAAA  240
EGDMRSAKQA GKRPVAAAAV AEQPSKRPWL PPSPSTPCDG GPSQAMGNRQ VPMQGLSLMH  300
NFPPPPTTFC GHAPLQQGFP VHNNRAQMRW PTMQHNCMPS PAHSFQPRPV QRRPVLVGQA  360
PPQRGPVHHV GGHAPMHMHQ AQWTPVHIAQ APMQQLPFDD WVFDPFDDPP PPMQQLPVMM  420
NNYQPQAPMQ LPPMMNNDQP AMVHGGELQA PMQLLPATTH GGEVQAPMPL NVYEEEQRPS  480
QEDGGQCTNA EG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-152118820163NO APICAL MERISTEM PROTEIN
1ut4_B1e-152118820163NO APICAL MERISTEM PROTEIN
1ut7_A1e-152118820163NO APICAL MERISTEM PROTEIN
1ut7_B1e-152118820163NO APICAL MERISTEM PROTEIN
4dul_A1e-152118820163NAC domain-containing protein 19
4dul_B1e-152118820163NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881431.11e-178pollen-specific leucine-rich repeat extensin-like protein 1
TrEMBLA0A0E0HGX40.0A0A0E0HGX4_ORYNI; Uncharacterized protein
STRINGONIVA05G23670.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143612024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.19e-19NAC family protein