PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA05G23660.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

VOZ

Protein Properties

Length: 603aa MW: 66025.9 Da PI: 5.4433

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G23660.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	420.3	3.2e-129	299	516	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 p+ps++lgpkcalwdc rp++gs+++q+yc+ +ha laln+ gl+gt+pv+rp+gidlkdg+lfaalsakvqgk+vgip+cegaat+kspwna+ ONIVA05G23660.1 299 PSPSQYLGPKCALWDCGRPVRGSDECQHYCNPYHAGLALNDdGLLGTRPVMRPRGIDLKDGPLFAALSAKVQGKNVGIPVCEGAATTKSPWNAP 392 89************************************9799********************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlel 187 elfdlsllege++rewlffd+prraf+sgnrkqrslpdy+grgwhesrkqvmk+fgglkrsyymdpqpss++ewhl+eye+n++dalalyrle+ ONIVA05G23660.1 393 ELFDLSLLEGESLREWLFFDTPRRAFDSGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKRSYYMDPQPSSNYEWHLFEYETNDSDALALYRLEY 486 ****************************************************************************************** PP VOZ 188 klvdekksakgkvskdsladlqkklgrlta 217 k++d+k+s+k+k+++++l+++q++++rl+a ONIVA05G23660.1 487 KSSDTKRSVKSKLASSPLSEIQQQMVRLSA 516 **************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence Send to blast
MAGDPAAGGD GGRGSSGGKG SSRSSSRHQQ FRNLAKTRVD DLQEMFSGLQ SARKESRSAD 60 AALLEEQVHH MLREWRAELN NSQSQGNNRE ASDPPSETLR LLQLAGAEEE DDATSKLVMP 120 RSPMPMQSSH EGHNLSPVLQ GGTMAGGAAE LMVPRSPLQQ MPSSHQSHGH GQDGGQNLQG 180 EAVMGSTAAT AAPHLGQGMQ GDCGGMAGVT NAMFHDQLYY IDHELNIDDF LQDDDYKINL 240 PGSNPDGPNT MQGIGQLEHQ QYNLPLDLPP NSFVDANNSA QSSGDVFFHM SDLLTTMCPS 300 PSQYLGPKCA LWDCGRPVRG SDECQHYCNP YHAGLALNDD GLLGTRPVMR PRGIDLKDGP 360 LFAALSAKVQ GKNVGIPVCE GAATTKSPWN APELFDLSLL EGESLREWLF FDTPRRAFDS 420 GNRKQRSLPD YNGRGWHESR KQVMKDFGGL KRSYYMDPQP SSNYEWHLFE YETNDSDALA 480 LYRLEYKSSD TKRSVKSKLA SSPLSEIQQQ MVRLSADSPV ESKRTARSRG KANQKDNNSN 540 AYPALNTPVQ VSASNAHQTM SVNTPDQMDQ MTFLDGSVVY GPHLPYGYST ERSDFYWNPS 600 DGT

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence Send to blast

MAGDPAAGGD GGRGSSGGKG SSRSSSRHQQ FRNLAKTRVD DLQEMFSGLQ SARKESRSAD  60
AALLEEQVHH MLREWRAELN NSQSQGNNRE ASDPPSETLR LLQLAGAEEE DDATSKLVMP  120
RSPMPMQSSH EGHNLSPVLQ GGTMAGGAAE LMVPRSPLQQ MPSSHQSHGH GQDGGQNLQG  180
EAVMGSTAAT AAPHLGQGMQ GDCGGMAGVT NAMFHDQLYY IDHELNIDDF LQDDDYKINL  240
PGSNPDGPNT MQGIGQLEHQ QYNLPLDLPP NSFVDANNSA QSSGDVFFHM SDLLTTMCPS  300
PSQYLGPKCA LWDCGRPVRG SDECQHYCNP YHAGLALNDD GLLGTRPVMR PRGIDLKDGP  360
LFAALSAKVQ GKNVGIPVCE GAATTKSPWN APELFDLSLL EGESLREWLF FDTPRRAFDS  420
GNRKQRSLPD YNGRGWHESR KQVMKDFGGL KRSYYMDPQP SSNYEWHLFE YETNDSDALA  480
LYRLEYKSSD TKRSVKSKLA SSPLSEIQQQ MVRLSADSPV ESKRTARSRG KANQKDNNSN  540
AYPALNTPVQ VSASNAHQTM SVNTPDQMDQ MTFLDGSVVY GPHLPYGYST ERSDFYWNPS  600
DGT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069076	0.0	AK069076.1 Oryza sativa Japonica Group cDNA clone:J023004H20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015640409.1	0.0	transcription factor VOZ1
Swissprot	Q9SGQ0	1e-114	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A0E0HGX3	0.0	A0A0E0HGX3_ORYNI; Uncharacterized protein
STRING	ONIVA05G23660.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2343	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-111	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]