PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G23460.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 315aa    MW: 32729.2 Da    PI: 7.4834
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G23460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.32.8e-3075177389
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 
                      g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+++a+++i++l+ ++++++    +++ + +a++s ++        
  ONIVA05G23460.1  75 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLINAAQAEIDKLPPLQFPPH----DHDLVAAAASSMAPppfanggd 164
                      78*************************************************************99999....2222222221111122223334 PP

              TCP  89 ............k 89 
                                  +
  ONIVA05G23460.1 165 ghhgasassmleD 177
                      4443333333330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-2676138IPR005333Transcription factor, TCP
PROSITE profilePS5136929.95976134IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MACMAGVDNR GGEALSPAAV ASGRGRSNHE QLKMISNNST NEELGGGGAA AAVASSRHWS  60
ASTESRIVRV SRVFGGKDRH SKVRTVKGLR DRRVRLSVPT AIQLYDLQDR LGLSQPSKVV  120
DWLINAAQAE IDKLPPLQFP PHDHDLVAAA ASSMAPPPFA NGGDGHHGAS ASSMLEDGDK  180
AAGGGGMKAF MSLSNSLGLL NAATMPATLA AHHHHHHHAA AYYAAAESWG NGGNGGHHHD  240
VSHGVSPSAH NSPFPSLLSL APGSHHQFVF YSPEGGGFAV KEAAAEQFPV DSLDHSQGQL  300
TLSSARSFLH SGSQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2081135155Putative transcription factor PCF6
5zkt_B2e-2081135155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637968.11e-152transcription factor TCP13
TrEMBLA0A0E0HGV10.0A0A0E0HGV1_ORYNI; Uncharacterized protein
STRINGONIVA05G23460.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-40TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5