PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G21450.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 286aa    MW: 31738 Da    PI: 7.578
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G21450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY536.6e-17142203259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                      +Dg++WrKYG K++ +sef + YYrC ++   +C++kk v++++ + p  + +t ++eH+++
  ONIVA05G21450.1 142 NDGFHWRKYGEKKILDSEFRKLYYRCGYSderKCQAKKYVQQENnKHPPEFRVTLTNEHTCN 203
                      7**************************998899*******98761578899********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182902.62E-18135203IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-18136203IPR003657WRKY domain
SMARTSM007749.8E-26141204IPR003657WRKY domain
PfamPF031062.7E-19142202IPR003657WRKY domain
PROSITE profilePS5081112.656142205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MARRLPKSER SPSLPPPPPS DQRDAAIQEL SKGSELATQL MAQLELIPER ELDGRRDDAL  60
ANVRSLSMSL SSSLYALRSE RREHHNCGSS SSSGGAGPAA VTSVSGGGRG GGSGARNKTK  120
RRRGKHGEEL TETVFITTTP ENDGFHWRKY GEKKILDSEF RKLYYRCGYS DERKCQAKKY  180
VQQENNKHPP EFRVTLTNEH TCNTLFQDQP SSSSTNSQVL DFTKASISSP LMDSHVGATI  240
LKKEEEEEVP SIDESSRIMS TIMRNYGAYG DYDESSPQSW NGAGWQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8364070.0CT836407.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA113F18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638351.11e-157probable WRKY transcription factor 63
TrEMBLA0A0E0HG170.0A0A0E0HG17_ORYNI; Uncharacterized protein
STRINGONIVA05G21450.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99932944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-15WRKY DNA-binding protein 55