PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G12270.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 559aa    MW: 59833.2 Da    PI: 3.8286
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G12270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.61.7e-2571381128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgkdke 91 
                      l pG++F+P+d++lv +yL ++++g++l+l+ vi e+d +++ Pw+L +  +++ +e +fF++++ k+ +gkr++r +   g+W+  +t  d e
  ONIVA05G12270.1   7 LLPGLKFDPSDHDLVGRYLLRRLQGQPLPLDGVILEADPLSAPPWKLLAD-HGRGDEAFFFAEAHAKNGKGKRQKRtVEGGGFWQgqKTCVDGE 99 
                      579***************************999**************743.456789*******************555599**9334444555 PP

              NAM  92 vlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       l+     + e  + k +L f+  + ++g ++ Wvmhey++
  ONIVA05G12270.1 100 RLCVpddgGLEIAWRKYVLSFFA-NGERG-SSGWVMHEYAV 138
                      444456655555888999****4.44444.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-314157IPR003441NAC domain
PROSITE profilePS5100528.9417157IPR003441NAC domain
PfamPF023655.9E-159137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MAAADGLLPG LKFDPSDHDL VGRYLLRRLQ GQPLPLDGVI LEADPLSAPP WKLLADHGRG  60
DEAFFFAEAH AKNGKGKRQK RTVEGGGFWQ GQKTCVDGER LCVPDDGGLE IAWRKYVLSF  120
FANGERGSSG WVMHEYAVTA PDGLASSQLR LYRVRFSGYG KKRKREPQCP GAHGDDDGEL  180
QRAPPPRSMA GTALLEERGP LPHPVLGPAS VVDQCTDQCS SGVIDDSSVV FRDLPDLIDL  240
PVAEEADASH GAETALLNEH LPLPPPQLFV PPTAVPLDLA DDSNGADQNS YGMMGDDQLL  300
LPDLPGTIND DMPDLFVSQA EEASAVPAIS YHSSGFMGNE VAALSDFELP ESYSSSDAMD  360
GEALALSNYE FPESFEEDLS CFDFATANAS SLGFPMDGYP MDELFDDMPD QGSSGAMDDS  420
SVVFRDLPGL INLPAAEEAD AIGDAETALL RDLADDSNGT DRNSYGVMGD DQDRLLLPEI  480
PRRIDMPDLF VSQAEEAGLG GGAALDSSSG AMDGEALALS DFEFPESVEE VLSCMDFSTV  540
DMSCLDVPID ELLDDLPAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1343460.0AC134346.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0018A03, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638590.10.0uncharacterized protein LOC107275325
TrEMBLA0A0E0HCN50.0A0A0E0HCN5_ORYNI; Uncharacterized protein
STRINGONIVA05G12270.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.16e-09NAC domain containing protein 5