PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G12080.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 428aa    MW: 44034.7 Da    PI: 7.1684
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G12080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.91.5e-26228287258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                      dDgy+WrKYGqK++ gs++prsYYrCt++   gC++kkkv+r ++dp + e+tY g+H++
  ONIVA05G12080.1 228 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnyyGCEAKKKVQRLDDDPFTYEVTYCGNHTC 287
                      8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-27219287IPR003657WRKY domain
PROSITE profilePS5081121.551222285IPR003657WRKY domain
SuperFamilySSF1182903.14E-24224287IPR003657WRKY domain
SMARTSM007748.1E-37227289IPR003657WRKY domain
PfamPF031069.3E-25228287IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MHVFAPHQVT PLSVLLAAAA GGGFDRRDRS RVVGGGGGGQ EGWEMDEVLA QISEGFRLAG  60
ELMSELAATQ NDPDYLAARC HAIAGAYAAA ARVLQGARHG GGGVGAASTS FGGEGYLHHQ  120
HRQQLDLLRM CVGGTAPDEA AAAANPFLGG GGGATTAAFR APSDAYGGAG AGTSGGPVRR  180
VSSSSRSPPS PVQPRQGGAG SRRRRESGEK VTVMVAAQRT GNTEQPPDDG YTWRKYGQKD  240
ILGSRYPRSY YRCTHKNYYG CEAKKKVQRL DDDPFTYEVT YCGNHTCLTS TTPLLTLPAA  300
AATSVTNSPT AAAVLGQDFV MAPAADQQPP QHQQAQPPLS TSIHLGIGWP MTPASLAGAV  360
GEGSTSTTAT APQVTTMGAT AAGGGGAAAR DADHYPVADL ADVMFNSGGS GSSSIMDGIF  420
SSHDRRDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-21228287968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2878170.0AK287817.1 Oryza sativa Japonica Group cDNA, clone: J065181J09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638743.10.0WRKY transcription factor 55
TrEMBLA0A0E0HCL20.0A0A0E0HCL2_ORYNI; Uncharacterized protein
STRINGONIVA05G12080.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-37WRKY DNA-binding protein 55