PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G02040.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 179aa    MW: 19877.2 Da    PI: 7.0156
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G02040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY871.6e-273997259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                      D ++WrKYGqK++kgs++ r+YY+C+s  gCp++k+v+++++d ++++itY+++Hnh+
  ONIVA05G02040.1 39 ADSWSWRKYGQKPIKGSPHLRGYYKCSSYrGCPARKQVDKCRNDASLLIITYTSDHNHD 97
                     69************************9877****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-313198IPR003657WRKY domain
SuperFamilySSF1182908.76E-243397IPR003657WRKY domain
SMARTSM007747.2E-323898IPR003657WRKY domain
PfamPF031063.8E-234097IPR003657WRKY domain
PROSITE profilePS5081126.7274099IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MTKMSSMKAD GSVPKRRRQD VQKVVVSLKD HKVEQGPPAD SWSWRKYGQK PIKGSPHLRG  60
YYKCSSYRGC PARKQVDKCR NDASLLIITY TSDHNHDNYA ATTTNSVQEQ AHNPDTSDPL  120
SNGMSLAEVV TVASSKLSGE EESCDFFDEL EELPVSASPL PSLSFMVQEC SFSDARTLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-1640971672WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8364660.0CT836466.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038N04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639937.11e-131probable WRKY transcription factor 69
TrEMBLA0A0E0H8Y31e-131A0A0E0H8Y3_ORYNI; Uncharacterized protein
TrEMBLB8AXL01e-131B8AXL0_ORYSI; Uncharacterized protein
STRINGONIVA05G02040.11e-132(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149121821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.18e-33WRKY DNA-binding protein 65