PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G01910.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 330aa    MW: 36655.6 Da    PI: 6.1586
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G01910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix636.7e-2054118165
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 
                      +W++ e+ a +++r ++++++ ++k++k+lWe+ s+++++ gf r+p qCk+kw+nl +r+k ++
  ONIVA05G01910.1  54 QWSHAETAAFLAIRADLDHSFLSTKRNKALWEAASARLHALGFARTPDQCKSKWKNLVTRFKGTE 118
                      7*************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.96E-2153118No hitNo description
PfamPF138376.9E-1554118No hitNo description
PROSITE profilePS500907.06255111IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDPFHHLNSS FSNPYHPLLA SPPHHFAPDP LPPPPPPPLL PADPPSLERE RLPQWSHAET  60
AAFLAIRADL DHSFLSTKRN KALWEAASAR LHALGFARTP DQCKSKWKNL VTRFKGTEGA  120
AAVAAAGTDQ MQGGQGGGAA ARGSSSSFPF HDELRRIFDA RVERARALER KKVKGKDPDD  180
DHDGGGDGDE DDEEEADQQV DEEDDGASGD TTRAGSKKRR RKAAAAARRT GSTGGVEGEV  240
EAMLREFMRR QIEMEERWME AAEAREAERR AREEEWRTAM VALGEERLAL VRRWREREDA  300
WRARAEEREE RRHQLVAALL AKLGAGDASA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216221KKRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1305980.0AC130598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0056I11, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637590.11e-145trihelix transcription factor GT-3b
RefseqXP_015637591.11e-145trihelix transcription factor GT-3b
TrEMBLA0A0E0H8W80.0A0A0E0H8W8_ORYNI; Uncharacterized protein
STRINGONIVA05G01910.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125953134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.13e-26Trihelix family protein