PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G29890.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 285aa MW: 31939.8 Da PI: 6.5015

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G29890.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	151.1	5.3e-47	8	142	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek..ewyfFskrdkkya....tgkrknratksgyWkatgkd 89 +pGfrFhPt+eelv +yL++kv g++ + +i+evd++++ePwdL +++++++ +yfFs +d+ky+ tg+r+nrat++g+Wkatg+d ONIVA04G29890.1 8 APGFRFHPTEEELVGYYLARKVVGQQDDG--IIQEVDLNSIEPWDLL-QAQQHDQeyYCYFFSYKDRKYPsargTGTRTNRATAAGFWKATGRD 98 79**********************666..8**********7.34444441366******98888899************* PP NAM 90 kevlsk..kgel.....vglkktLvfykgrapkgektdWvmheyrl 128 k+vls+ + +g++ktLvfy+grap+g ktdW++heyrl ONIVA04G29890.1 99 KPVLSSsrS--SsspavIGMRKTLVFYRGRAPNGCKTDWIIHEYRL 142 *8551..245556*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-49	3	162	IPR003441	NAC domain
PROSITE profile	PS51005	51.068	7	162	IPR003441	NAC domain
Pfam	PF02365	5.4E-25	9	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MEEWCCVAPG FRFHPTEEEL VGYYLARKVV GQQDDGIIQE VDLNSIEPWD LLQAQQHDQE 60 YYCYFFSYKD RKYPSARGTG TRTNRATAAG FWKATGRDKP VLSSSRSSSS PAVIGMRKTL 120 VFYRGRAPNG CKTDWIIHEY RLVAHHQQPD GSCWVVCRAF HKPTTTTLQH QLHLHRPPPL 180 LHHPGYYDDQ YLYPPPAAAG GGGLLCSPAL DMELEDEEDE SKMMILSNDN IPLVVSPTAV 240 HTQGTGGDII NDATTAPAAA DHRRHPELLA AGPIDTLLHH HHFTC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-38	7	162	15	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL732342	0.0	AL732342.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0518A01, complete sequence.
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635310.1	1e-162	NAC domain-containing protein 105
Swissprot	Q9FH59	2e-59	NC105_ARATH; NAC domain-containing protein 105
TrEMBL	A0A0E0H839	0.0	A0A0E0H839_ORYNI; Uncharacterized protein
STRING	ONIVA04G29890.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19027	9	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66300.1	1e-48	NAC domain containing protein 105

Publications ? help Back to Top
Tan TT, et al. Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation. Plant Physiol., 2018. 176(1): p. 773-789 [PMID:29133368]