PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G27600.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 384aa    MW: 41049.8 Da    PI: 9.2265
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G27600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix552.2e-1767154273
         trihelix   2 WtkqevlaLiearremeerlrr.gk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                      Wt +e+l Li+a+r +++r    g                +++++W++v +++++ g+ rs++qC++kw+nl ++ykk+++ e++ ++
  ONIVA04G27600.1  67 WTLHETLILITAKRLDDDRRAGvGGaaaggggagspptprSAEQRWKWVENYCWKNGCLRSQNQCNDKWDNLLRDYKKVRDYESRVAA 154
                      *************966666553122345666677777777*****************************************9998743 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.60959139IPR017877Myb-like domain
PfamPF138375.3E-1166150No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MSGSSADPSP SASTAGAAVS PLALLRAHGH GHGHLTATPP SGATGPAPPP PSPASGSAPR  60
DYRKGNWTLH ETLILITAKR LDDDRRAGVG GAAAGGGGAG SPPTPRSAEQ RWKWVENYCW  120
KNGCLRSQNQ CNDKWDNLLR DYKKVRDYES RVAAAAAANS APLPSYWTME RHERKDCNLP  180
TNLAPEVYDA LSEVLSRRAA RRGGATIAPT PPPPPLALPL PPPPPPSPPK PLVAQQQHHH  240
HGHHHHPPPP QPPPSSLQLP PAVVAPPPAS VSAEEEMSGS SESGEEEEGS GGEPEAKRRR  300
LNRLGSSVVR SATVVARTLV ACEEKRERRH RELLQLEERR LRLEEERTEV RRQGFAGLIA  360
AVNSLSSAIH ALVSDHRSGD SSGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296300KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3833720.0DQ383372.1 Oryza nivara voucher IRGC 80470 shattering protein (sh4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635337.11e-136trihelix transcription factor ASR3
TrEMBLA0A0E0H7910.0A0A0E0H791_ORYNI; Uncharacterized protein
STRINGONIVA04G27600.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-42Trihelix family protein