PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G22850.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 515aa    MW: 53081.3 Da    PI: 5.3217
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G22850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.8e-31264322259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  ONIVA04G22850.1 264 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 322
                      699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.109258324IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-30261324IPR003657WRKY domain
SuperFamilySSF1182903.66E-26261324IPR003657WRKY domain
SMARTSM007741.4E-37263323IPR003657WRKY domain
PfamPF031061.2E-25265322IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MPPCVWGSHT PLSLLSPPAA WAGERMEGDQ AGGDLTDIVR AGGGAMPGSV VVDLPSTAAE  60
WQLPAEPMLF PPPPSLSSTT DGCGAGGAAG ADIFGGGGGD LFSGLVDPFS SDYSSGADFL  120
DAMPDAIAKV GFDTAVGGGC GGGGGGGGGG SGGHLLDMSR KPLLPRGMPM AAVGGLAAPR  180
VMPSPLSPRA IRPYPPISAG DMMKLGITAG QAAGCAIDAA VAGMQMSSPR SGGIKRRKNQ  240
ARKVVCIPAP TAAGGRPSGE VVPSDLWAWR KYGQKPIKGS PYPRGYYRCS SSKGCSARKQ  300
VERSRTDPNM LVITYTSEHN HPWPTQRNAL AGSTRSHHSK NSGGGGGSGS KGSQNDKSQQ  360
QPSVKEEQKD QATTATTTTT STITTTNSAS PVVVKEEEAA LAGSSEALEL ERVMDTTAAG  420
VVDHSELMDH VFSESYKPMI PETGQPDDFF ADLAELESDP MSLIFSKEYM EAKPSGGDHA  480
QEKAMAKELD PFDMLDWSTT TNSSAGSSFE QGKRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-25238325280Disease resistance protein RRS1
5w3x_D5e-25238325280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109120.0AK110912.1 Oryza sativa Japonica Group cDNA clone:002-173-C03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634477.10.0probable WRKY transcription factor 4
TrEMBLA0A0E0H5D40.0A0A0E0H5D4_ORYNI; Uncharacterized protein
STRINGONIVA04G22850.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.18e-65WRKY DNA-binding protein 35