PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G18900.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 319aa    MW: 33153.8 Da    PI: 4.7654
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G18900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-20153203255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f+tae+Aa a+++a+ +++g
  ONIVA04G18900.1 153 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFDTAEDAALAYDRAAYRMRG 203
                      8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.12E-30152211No hitNo description
Gene3DG3DSA:3.30.730.102.4E-32152211IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-23153213IPR016177DNA-binding domain
PfamPF008473.9E-14153203IPR001471AP2/ERF domain
PROSITE profilePS5103224.276153211IPR001471AP2/ERF domain
SMARTSM003805.9E-39153217IPR001471AP2/ERF domain
PRINTSPR003675.2E-11154165IPR001471AP2/ERF domain
PRINTSPR003675.2E-11177193IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MARSMLRNHP EASVLDTIRQ HLLEEPRGGG GGGGEAAEAS FGSLVADMWS DSLPFRDDDA  60
DDMVVFGAMR DAFSCGWLPD GVFAEVKPEP LLSPDSSSYD GSSCCFGFAD VSEPVTPSDA  120
ASGAAEAAAA AAAATAEHGK EEEAAAAVAR GKHYRGVRQR PWGKFAAEIR DPAKNGARVW  180
LGTFDTAEDA ALAYDRAAYR MRGSRALLNF PLRIGSEIAA AAAAAAAAAA GDKRPSPEPA  240
TSESSFSSSS SCTTTTTSSS TSSSGSPKRR KRGEAAAASM SMPLVPPPSQ LNWPVQAWYP  300
AAAPVEQVAI TPRVEQLVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-40149216168ATERF1
3gcc_A6e-40149216168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636763.11e-167ethylene-responsive transcription factor 2
TrEMBLA0A0E0H3V00.0A0A0E0H3V0_ORYNI; Uncharacterized protein
TrEMBLA2XW480.0A2XW48_ORYSI; Uncharacterized protein
STRINGONIVA04G18900.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.15e-28ethylene responsive element binding factor 1