PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G17140.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 262aa    MW: 28331.8 Da    PI: 7.0035
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G17140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTteEd+ lv  ++++G g+W++ ++  g+ R++k+c++rw +yl
  ONIVA04G17140.1 14 KGPWTTEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding52.51.1e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ +++++++lG++ W++Ia++++ gRt++++k+ w++yl
  ONIVA04G17140.1  67 RGNFSKEEEDTIIHLHELLGNR-WSAIAARLP-GRTDNEIKNVWHTYL 112
                      89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-25564IPR009057Homeodomain-like
PROSITE profilePS5129415.622961IPR017930Myb domain
SuperFamilySSF466898.24E-3110108IPR009057Homeodomain-like
SMARTSM007178.8E-131363IPR001005SANT/Myb domain
PfamPF002494.7E-151461IPR001005SANT/Myb domain
CDDcd001673.63E-101661No hitNo description
PROSITE profilePS5129425.50762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-2665116IPR009057Homeodomain-like
SMARTSM007177.4E-1566114IPR001005SANT/Myb domain
PfamPF002496.3E-1667112IPR001005SANT/Myb domain
CDDcd001677.73E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGPWTTE EDKVLVAHIQ RHGHGNWRAL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF SKEEEDTIIH LHELLGNRWS AIAARLPGRT DNEIKNVWHT YLKKRLDAPA  120
QGGHVAASGG KKHKKPKSAK KPAAAAAAAP PASPERSASS SVTESSMASS VAEEHGNAGI  180
SSASASASAS VCAKEESSFT SASEEFQIDD SFWSETLSMP LDGYDVSMEP GDAFVAPPSA  240
DDMDYWLGVF MESGEAQDLP QI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121185110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00375DAPTransfer from AT3G23250Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankY114140.0Y11414.1 O.sativa mRNA for myb factor, 1202 bp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633465.11e-162transcription factor MYB4
SwissprotQ7XBH41e-163MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A0E0H3760.0A0A0E0H376_ORYNI; Uncharacterized protein
STRINGONIVA04G17140.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-73myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]