PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G13890.5

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 283aa MW: 29611.8 Da PI: 10.0109

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G13890.5	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107.2	8.3e-34	39	97	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+++d k v++tYeg+Hnhe ONIVA04G13890.5 39 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCLVRKHVERASHDLKSVITTYEGKHNHE 97 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.8E-37	24	99	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-29	31	99	IPR003657	WRKY domain
PROSITE profile	PS50811	37.7	34	99	IPR003657	WRKY domain
SMART	SM00774	9.2E-39	39	98	IPR003657	WRKY domain
Pfam	PF03106	1.1E-25	40	97	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MNECFRKLDS CATMDMSTAS RAVREPRVVI QTTSEVDILD DGYRWRKYGQ KVVKGNPNPR 60 SYYKCTHPGC LVRKHVERAS HDLKSVITTY EGKHNHEVPA ARNSGHPAGS ASPGGGAGSS 120 SQPHGVGVGG RRPEVPSVQE SLMRLGGGCG AAPFPPHFGL HLPPPPPRDP LAPMSNFPYS 180 LGHAPSPALR GLPPPPPPPP SASALAVAGL GGVVEGLKYP MLAPPSVHSL LRHRQGGGME 240 AVVVPKAEVK QEAMPPAAAV AGAGRGAAVY QQAMSRVSLG NQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-38	30	100	8	78	Probable WRKY transcription factor 4
2lex_A	2e-38	30	100	8	78	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY341843	0.0	AY341843.1 Oryza sativa (japonica cultivar-group) WRKY2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634497.1	1e-150	probable WRKY transcription factor 2 isoform X2
Refseq	XP_015634498.1	1e-152	WRKY transcription factor SUSIBA2 isoform X1
TrEMBL	A0A0E0H210	0.0	A0A0E0H210_ORYNI; Uncharacterized protein
STRING	ORUFI04G17090.1	1e-150	(Oryza rufipogon)
STRING	OS04T0471700-00	1e-150	(Oryza sativa)
STRING	ONIVA04G13890.1	1e-150	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	9e-53	WRKY DNA-binding protein 2