PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G13890.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 527aa MW: 54763.6 Da PI: 5.2914 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.7 | 7.8e-31 | 308 | 365 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +Dgy+WrKYGqK+vk se+prsYY+Ct+a+C vkkkvers+ +++v+ei+Y+g+Hnh+k ONIVA04G13890.4 308 EDGYSWRKYGQKQVKHSEYPRSYYKCTHASCAVKKKVERSH-EGHVTEIIYKGTHNHPK 365 8****************************************.***************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.0E-28 | 296 | 366 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.571 | 302 | 366 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.71E-25 | 303 | 366 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.1E-33 | 307 | 365 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-23 | 308 | 364 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MAFLIVYVPF AIWWGEMEGD IAMEEWKDSN HRGADYLMTM PMQNFLADAF PPPELLEGEG 60 GFEKHGLSVA VGSPPPTPPP PEDGCSPLPL TPQFGQKFGS GGGGGGGSLA DRRARGGFSN 120 VARISVPYNQ PVADVSSAGA PSPYVTIPPG LSPTTLLESP VFFSNAMGQA SPTTGKLHML 180 GGANDSNPIR FESPPIEEGS GAFSFKPLNL ASSQYAAAEK TKSLPNNQHQ SLPISVKTEA 240 TSIQTAQDEA AANQLMQPQF NGGKRSRAAP DNGGDGEGQP VEGDAKADSS SGAAAVAVVA 300 AAAAAVAEDG YSWRKYGQKQ VKHSEYPRSY YKCTHASCAV KKKVERSHEG HVTEIIYKGT 360 HNHPKPAASR RPPVHPPPPS PATTTTTPLP PGDAQADHAP DGGGGSTPVG AGQAGAEWHN 420 GGVVGGEGLV DATSSPSVPG ELCESTASMQ VHEGAAAAQL GESPEGVDVT SAVSDEVDRD 480 DKATHVLPLA AAAADGESDE LERKRRSHTH QYHCPLCSFH GIAREIV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-15 | 306 | 366 | 13 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 503 | 507 | KRRSH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY341843 | 0.0 | AY341843.1 Oryza sativa (japonica cultivar-group) WRKY2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634497.1 | 0.0 | probable WRKY transcription factor 2 isoform X2 | ||||
Refseq | XP_015634498.1 | 0.0 | WRKY transcription factor SUSIBA2 isoform X1 | ||||
TrEMBL | A0A0E0H209 | 0.0 | A0A0E0H209_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA04G13890.1 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 3e-39 | WRKY DNA-binding protein 2 |