PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G13890.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 783aa    MW: 81158.7 Da    PI: 6.73
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G13890.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30308365260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +Dgy+WrKYGqK+vk se+prsYY+Ct+a+C vkkkvers+ +++v+ei+Y+g+Hnh+k
  ONIVA04G13890.3 308 EDGYSWRKYGQKQVKHSEYPRSYYKCTHASCAVKKKVERSH-EGHVTEIIYKGTHNHPK 365
                      8****************************************.***************85 PP
2WRKY105.13.6e-33539597159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+++d k v++tYeg+Hnhe
  ONIVA04G13890.3 539 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCLVRKHVERASHDLKSVITTYEGKHNHE 597
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.5E-28296366IPR003657WRKY domain
PROSITE profilePS5081123.571302366IPR003657WRKY domain
SuperFamilySSF1182907.98E-25303366IPR003657WRKY domain
SMARTSM007746.1E-33307365IPR003657WRKY domain
PfamPF031061.9E-23308364IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.0E-37524599IPR003657WRKY domain
SuperFamilySSF1182906.28E-29531599IPR003657WRKY domain
PROSITE profilePS5081137.7534599IPR003657WRKY domain
SMARTSM007749.2E-39539598IPR003657WRKY domain
PfamPF031064.8E-25540597IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 783 aa     Download sequence    Send to blast
MAFLIVYVPF AIWWGEMEGD IAMEEWKDSN HRGADYLMTM PMQNFLADAF PPPELLEGEG  60
GFEKHGLSVA VGSPPPTPPP PEDGCSPLPL TPQFGQKFGS GGGGGGGSLA DRRARGGFSN  120
VARISVPYNQ PVADVSSAGA PSPYVTIPPG LSPTTLLESP VFFSNAMGQA SPTTGKLHML  180
GGANDSNPIR FESPPIEEGS GAFSFKPLNL ASSQYAAAEK TKSLPNNQHQ SLPISVKTEA  240
TSIQTAQDEA AANQLMQPQF NGGKRSRAAP DNGGDGEGQP VEGDAKADSS SGAAAVAVVA  300
AAAAAVAEDG YSWRKYGQKQ VKHSEYPRSY YKCTHASCAV KKKVERSHEG HVTEIIYKGT  360
HNHPKPAASR RPPVHPPPPS PATTTTTPLP PGDAQADHAP DGGGGSTPVG AGQAGAEWHN  420
GGVVGGEGLV DATSSPSVPG ELCESTASMQ VHEGAAAAQL GESPEGVDVT SAVSDEVDRD  480
DKATHVLPLA AAAADGESDE LERKRRKLDS CATMDMSTAS RAVREPRVVI QTTSEVDILD  540
DGYRWRKYGQ KVVKGNPNPR SYYKCTHPGC LVRKHVERAS HDLKSVITTY EGKHNHEVPA  600
ARNSGHPAGS ASPGGGAGSS SQPHGVGVGG RRPEVPSVQE SLMRLGGGCG AAPFPPHFGL  660
HLPPPPPRDP LAPMSNFPYS LGHAPSPALR GLPPPPPPPP SASALAVAGL GGVVEGLKYP  720
MLAPPSVHSL LRHRQGGGME AVVVPKAEVK QEAMPPAAAV AGAGRGAAVY QQAMSRVSLG  780
NQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-36290600278Probable WRKY transcription factor 4
2lex_A6e-36290600278Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418430.0AY341843.1 Oryza sativa (japonica cultivar-group) WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634497.10.0probable WRKY transcription factor 2 isoform X2
TrEMBLA0A0E0H2080.0A0A0E0H208_ORYNI; Uncharacterized protein
STRINGONIVA04G13890.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.12e-97WRKY DNA-binding protein 2