PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G13890.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 1040aa    MW: 108677 Da    PI: 6.3365
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G13890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-30565622260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +Dgy+WrKYGqK+vk se+prsYY+Ct+a+C vkkkvers+ +++v+ei+Y+g+Hnh+k
  ONIVA04G13890.1 565 EDGYSWRKYGQKQVKHSEYPRSYYKCTHASCAVKKKVERSH-EGHVTEIIYKGTHNHPK 622
                      8****************************************.***************85 PP
2WRKY104.65.2e-33796854159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+++d k v++tYeg+Hnhe
  ONIVA04G13890.1 796 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCLVRKHVERASHDLKSVITTYEGKHNHE 854
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-27553623IPR003657WRKY domain
PROSITE profilePS5081123.571559623IPR003657WRKY domain
SuperFamilySSF1182901.15E-24560623IPR003657WRKY domain
SMARTSM007746.1E-33564622IPR003657WRKY domain
PfamPF031062.7E-23565621IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-36781856IPR003657WRKY domain
SuperFamilySSF1182909.15E-29788856IPR003657WRKY domain
PROSITE profilePS5081137.7791856IPR003657WRKY domain
SMARTSM007749.2E-39796855IPR003657WRKY domain
PfamPF031066.8E-25797854IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1040 aa     Download sequence    Send to blast
MTMTTATLDP PPPPLLIAGS LLDDDRDAGS AASSSPRWLP WARGSTVGSP PRRGGEERGG  60
EAATRRKGNS SSPDDDDDCR NDEDDCRNDY DYRDDDVGAT TDGGGDTAAL LPMAMTTATT  120
MAPMPVEAAA DGGGELSSAG EGGQRRVNLL PAKILSAYEN HLFSQALACR WNACPPRKMD  180
LAPHLLQLMW HKALPPYRSF LVFGAHHLSL KNPCALFRLR LWSLWPLPIW EDEWIIEKLA  240
VLAARRSSFV SEESLCSVPA AALVSLAIAH LGEMEGDIAM EEWKDSNHRG ADYLMTMPMQ  300
NFLADAFPPP ELLEGEGGFE KHGLSVAVGS PPPTPPPPED GCSPLPLTPQ FGQKFGSGGG  360
GGGGSLADRR ARGGFSNVAR ISVPYNQPVA DVSSAGAPSP YVTIPPGLSP TTLLESPVFF  420
SNAMGQASPT TGKLHMLGGA NDSNPIRFES PPIEEGSGAF SFKPLNLASS QYAAAEKTKS  480
LPNNQHQSLP ISVKTEATSI QTAQDEAAAN QLMQPQFNGG KRSRAAPDNG GDGEGQPVEG  540
DAKADSSSGA AAVAVVAAAA AAVAEDGYSW RKYGQKQVKH SEYPRSYYKC THASCAVKKK  600
VERSHEGHVT EIIYKGTHNH PKPAASRRPP VHPPPPSPAT TTTTPLPPGD AQADHAPDGG  660
GGSTPVGAGQ AGAEWHNGGV VGGEGLVDAT SSPSVPGELC ESTASMQVHE GAAAAQLGES  720
PEGVDVTSAV SDEVDRDDKA THVLPLAAAA ADGESDELER KRRKLDSCAT MDMSTASRAV  780
REPRVVIQTT SEVDILDDGY RWRKYGQKVV KGNPNPRSYY KCTHPGCLVR KHVERASHDL  840
KSVITTYEGK HNHEVPAARN SGHPAGSASP GGGAGSSSQP HGVGVGGRRP EVPSVQESLM  900
RLGGGCGAAP FPPHFGLHLP PPPPRDPLAP MSNFPYSLGH APSPALRGLP PPPPPPPSAS  960
ALAVAGLGGV VEGLKYPMLA PPSVHSLLRH RQGGGMEAVV VPKAEVKQEA MPPAAAVAGA  1020
GRGAAVYQQA MSRVSLGNQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-35547857278Probable WRKY transcription factor 4
2lex_A1e-35547857278Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418430.0AY341843.1 Oryza sativa (japonica cultivar-group) WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634497.10.0probable WRKY transcription factor 2 isoform X2
TrEMBLA0A0E0H2060.0A0A0E0H206_ORYNI; Uncharacterized protein
STRINGONIVA04G13890.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.14e-95WRKY DNA-binding protein 2