PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G12810.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family EIL
Protein Properties Length: 444aa    MW: 48252.6 Da    PI: 4.6858
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G12810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3361.51.6e-110413372300
                      XXXXXXXXXXXXXXXXXXXXXX..XXXXX...........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
             EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaa..........tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpve 85 
                      +lkkrmwkdqmll++l++r+ ++ + + ++          + a++++ ++ ++rrk+m raQDg+L++Mlk+me+cna+GfvYgi++e+g pv+
  ONIVA04G12810.1  41 DLKKRMWKDQMLLMKLEGRSGHEGALAAQDhrvvrgeeeaAAAAEEEPPEARYRRKAMLRAQDGVLRHMLKMMEACNARGFVYGIVDESGVPVS 134
                      8******************99977665555667777777666667779********************************************** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--H CS
             EIN3  86 gasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkel 179
                      g+sdsLr+WWk++v+fdr+gp+a+s +        g+ ++ +++ s  h l ++qD+tlgSLLsal+qhc+ppqr+fpl++g++pPWWPtG e+
  ONIVA04G12810.1 135 GSSDSLRGWWKDDVAFDRAGPTALSGRG-----GRGSPRSPAAAASFLHGLLDIQDSTLGSLLSALIQHCEPPQRSFPLDRGLPPPWWPTGGEA 223
                      **************************94.....344455567899************************************************* PP

                      HHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXXXXX CS
             EIN3 180 wwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahssslrkqsp 272
                      wwg +g ++++qg+ppy+kphdlkkawk+s+L+avikh+sp++++ir+l++qsk+lq+kmsa++ +++++v+ qee++ ++   +         
  ONIVA04G12810.1 224 WWGLQGeAQASQGPPPYRKPHDLKKAWKISLLSAVIKHLSPRFDQIRKLVWQSKRLQHKMSARDADTWSRVITQEEALSRHALRS-------LH 310
                      ****************************************************************************976543322.......22 PP

                      XXXXXXXXXXXXXXXXXXX.XXXXXXXX CS
             EIN3 273 kvtlsceqkedvegkkeskikhvqavkt 300
                       + l+++++e +eg   ++ +h+ ++k+
  ONIVA04G12810.1 311 ITPLDDDDDEPNEGPTPRE-SHADKRKR 337
                      2333333333333333333.44444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.5E-11641299No hitNo description
Gene3DG3DSA:1.10.3180.101.0E-63172306IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.35E-56177302IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MDDKGKAKAA DAAAAAEAAP EQEEEFFSDS ESGSESIEIA DLKKRMWKDQ MLLMKLEGRS  60
GHEGALAAQD HRVVRGEEEA AAAAEEEPPE ARYRRKAMLR AQDGVLRHML KMMEACNARG  120
FVYGIVDESG VPVSGSSDSL RGWWKDDVAF DRAGPTALSG RGGRGSPRSP AAAASFLHGL  180
LDIQDSTLGS LLSALIQHCE PPQRSFPLDR GLPPPWWPTG GEAWWGLQGE AQASQGPPPY  240
RKPHDLKKAW KISLLSAVIK HLSPRFDQIR KLVWQSKRLQ HKMSARDADT WSRVITQEEA  300
LSRHALRSLH ITPLDDDDDE PNEGPTPRES HADKRKREVG GGGGEEMQLS LPADIDVVPE  360
ADRSSIDELM KLYYSCLQGT DTDGGGGEQG KDVAAGAGGD GSVAPETVHV DDDDMLEGLL  420
GVAQVVDMSD FPDSPIWHWG SSSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A2e-491783034128Protein ETHYLENE INSENSITIVE 3
4zds_B2e-491783034128Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8551640.0CR855164.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0523F07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635387.10.0ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ56e-90EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLA0A0E0H1M00.0A0A0E0H1M0_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PA120.0A0A0E0PA12_ORYRU; Uncharacterized protein
STRINGORUFI04G16070.10.0(Oryza rufipogon)
STRINGONIVA04G12810.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.16e-89EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]