PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G11520.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 200aa    MW: 22498.1 Da    PI: 5.7366
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G11520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.86.6e-3071231128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGf+F P+deel+ ++L++k++  +++  ++++++ ++ ++Pw+L+ k+ ++ ++wyfFs++ +        +r+  +g Wk     ++v+s
  ONIVA04G11520.1   7 LPPGFHFFPSDEELIIHFLRHKASLLPCQP-DIVPTLILNLYDPWELNGKALQSGNQWYFFSHATQ--------TRTSPNGHWKPIAD-ETVIS 90 
                      79*************************999.89**************976667789******9754........577889****9976.66667 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +g +vglkktL+f+ g+  ++ kt+Wvmhey+l
  ONIVA04G11520.1  91 -GGCNVGLKKTLIFFIGEPFEAIKTNWVMHEYHL 123
                      .7999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-413164IPR003441NAC domain
PROSITE profilePS5100538.6817165IPR003441NAC domain
PfamPF023654.9E-208123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAGASNLPPG FHFFPSDEEL IIHFLRHKAS LLPCQPDIVP TLILNLYDPW ELNGKALQSG  60
NQWYFFSHAT QTRTSPNGHW KPIADETVIS GGCNVGLKKT LIFFIGEPFE AIKTNWVMHE  120
YHLMDGSTNC SSSSTSSSSS KRSHKKKGHS DTESKNWVIC RVFESSYDSQ VSFHEEGTEL  180
SCLDEVFLSL DDYDEVSFAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-30617016170NO APICAL MERISTEM PROTEIN
1ut4_B1e-30617016170NO APICAL MERISTEM PROTEIN
1ut7_A1e-30617016170NO APICAL MERISTEM PROTEIN
1ut7_B1e-30617016170NO APICAL MERISTEM PROTEIN
3swm_A2e-30617019173NAC domain-containing protein 19
3swm_B2e-30617019173NAC domain-containing protein 19
3swm_C2e-30617019173NAC domain-containing protein 19
3swm_D2e-30617019173NAC domain-containing protein 19
3swp_A2e-30617019173NAC domain-containing protein 19
3swp_B2e-30617019173NAC domain-containing protein 19
3swp_C2e-30617019173NAC domain-containing protein 19
3swp_D2e-30617019173NAC domain-containing protein 19
4dul_A1e-30617016170NAC domain-containing protein 19
4dul_B1e-30617016170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2435850.0AK243585.1 Oryza sativa Japonica Group cDNA, clone: J100082O14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634043.11e-148NAC domain-containing protein 104
SwissprotQ8GWK62e-57NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0E0H1501e-147A0A0E0H150_ORYNI; Uncharacterized protein
STRINGONIVA04G11520.11e-148(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36673679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-56xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]