PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G11340.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 288aa    MW: 29223.6 Da    PI: 8.1747
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G11340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer88.18.7e-282774557
      ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                     +YkeC++NhAa++Gg+a+DGCgE+mp+     ++++lkCaACgCHR+FHRr  
  ONIVA04G11340.1 27 KYKECMRNHAAAMGGQAFDGCGEYMPA-----SPDSLKCAACGCHRSFHRRAA 74
                     7*************************9.....799****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015662.5E-242773IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.6E-222773IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-202772IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.0482873IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.78E-18156226IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-28160227IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-26168225IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDHLSLVPYE GGSAGGGGGG GGGGGGKYKE CMRNHAAAMG GQAFDGCGEY MPASPDSLKC  60
AACGCHRSFH RRAAAGIGGG PVFFRPPPPP QPHSHHAALQ GFLPSSVPAP PPPPQLALPY  120
HAVPAAAWHH AAAAAAGRAG SETPPRMDDF GPGSAGGSGS GGGGIFGRKR FRTKFTPEQK  180
ERMREFAEKQ GWRINRNDDG ALDRFCVEIG VKRHVLKVWM HNHKNQLASS PTSAAAAAAG  240
VMNPGAGIGL GTGLGTGISG DGDGDDDDTD DSPPRAAVSS PSPSPISV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-241692341880ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8551530.0CR855153.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0823A09, complete sequence.
GenBankCR8551880.0CR855188.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0102D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635194.11e-111zinc-finger homeodomain protein 8
SwissprotQ7X7N31e-112ZHD8_ORYSJ; Zinc-finger homeodomain protein 8
TrEMBLA0A0E0H1220.0A0A0E0H122_ORYNI; Uncharacterized protein
TrEMBLQ01IZ10.0Q01IZ1_ORYSA; H0823A09.8 protein
STRINGONIVA04G11340.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136492225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.16e-20homeobox protein 33