PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G04750.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 330aa    MW: 34785.4 Da    PI: 10.33
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G04750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.4e-31251309259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs+fpr+YY+C++  gCp++k+ver+  dp+++++tYegeH+h+
  ONIVA04G04750.1 251 ADDFSWRKYGQKPIKGSPFPRGYYKCSTLrGCPARKHVERDPADPSMLIVTYEGEHRHT 309
                      699***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.7E-20199248IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.9E-32238309IPR003657WRKY domain
PROSITE profilePS5081129.585245311IPR003657WRKY domain
SuperFamilySSF1182901.18E-25248309IPR003657WRKY domain
SMARTSM007745.4E-37250310IPR003657WRKY domain
PfamPF031066.9E-26252308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MITMDLMSGY GRVDEQVAIQ EAAAAGLRGM EHLILQLSQT GTSERSPAPA PAQEQQQQQQ  60
VDCREITDMT VSKFKKVISM LNRTGHARFR RGPVVAQSSG PAASEPAPVR SSPSAVSRPM  120
TLDFTKAASG YGKDAGFSVS GISAASSSFL SSVTGDGSVS NGRGGGSSSL MLPPPPATSC  180
GKPPLSSAAA AMSAGVGHKR KCHDHAHSEN IAGGKYGSTG GRCHCSKRRK HRVKRTIRVP  240
AISSKVADIP ADDFSWRKYG QKPIKGSPFP RGYYKCSTLR GCPARKHVER DPADPSMLIV  300
TYEGEHRHTP SAAGQDHPPA PPPPLALPLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20238308271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000250|UniProtKB:Q0JEE2}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00464DAPTransfer from AT4G31550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (By similarity) (PubMed:15618416). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (By similarity). Repressed by GA (PubMed:15618416). {ECO:0000250|UniProtKB:Q0JEE2, ECO:0000269|PubMed:15618416}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009540.0AK100954.1 Oryza sativa Japonica Group cDNA clone:J023139N16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633572.10.0WRKY transcription factor WRKY51
SwissprotQ6IEN10.0WRK51_ORYSI; WRKY transcription factor WRKY51
TrEMBLA0A0E0GYL20.0A0A0E0GYL2_ORYNI; Uncharacterized protein
STRINGONIVA04G04750.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.11e-88WRKY DNA-binding protein 11