PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G40320.1

Common Name

SNAC1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 314aa MW: 34989.6 Da PI: 7.1466

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G40320.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.4	2.3e-52	15	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtd+elv +yL++k++g++l++ +i+evd+yk++PwdLp+++ + +ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v ONIVA03G40320.1 15 LPPGFRFHPTDDELVEHYLCRKAAGQRLPV-PIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAP 107 79**************************.88***********8777899*********************************99 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g++ g+kk Lvfy g+ap+g+ktdW+mheyrl ONIVA03G40320.1 108 -RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRL 140 .999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-64	11	168	IPR003441	NAC domain
PROSITE profile	PS51005	60.377	15	168	IPR003441	NAC domain
Pfam	PF02365	3.1E-27	16	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MGMRRERDAE AELNLPPGFR FHPTDDELVE HYLCRKAAGQ RLPVPIIAEV DLYKFDPWDL 60 PERALFGARE WYFFTPRDRK YPNGSRPNRA AGNGYWKATG ADKPVAPRGR TLGIKKALVF 120 YAGKAPRGVK TDWIMHEYRL ADAGRAAAGA KKGSLRLDDW VLCRLYNKKN EWEKMQQGKE 180 VKEEASDMVT SQSHSHTHSW GETRTPESEI VDNDPFPELD SFPAFQPAPP PATAMMVPKK 240 ESMDDATAAA AAAATIPRNN SSLFVDLSYD DIQGMYSGLD MLPPGDDFYS SLFASPRVKG 300 TTPRAGAGMG MVPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-127	1	174	1	174	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269\|PubMed:16924117, ECO:0000269\|PubMed:20632034}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269\|PubMed:16924117, ECO:0000269\|PubMed:20632034}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ394702	0.0	DQ394702.1 Oryza sativa (japonica cultivar-group) stress-induced transcription factor NAC1 (snac1) mRNA, complete cds.
GenBank	KM576135	0.0	KM576135.1 Oryza nivara stress-induced transcription factor NAC1 (SNAC1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630558.1	0.0	NAC domain-containing protein 2-like
Swissprot	Q75HE5	0.0	NAC2_ORYSJ; NAC domain-containing protein 2
TrEMBL	A0A0A7DTE2	0.0	A0A0A7DTE2_ORYNI; Stress-induced transcription factor NAC1
TrEMBL	A2XNB9	0.0	A2XNB9_ORYSI; Stress-induced transcription factor NAC1
STRING	ONIVA03G40320.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4414	30	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08790.1	1e-80	NAC family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Takasaki H, et al. The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice. Mol. Genet. Genomics, 2010. 284(3): p. 173-83 [PMID:20632034] Chen Q,Wang Q,Xiong L,Lou Z A structural view of the conserved domain of rice stress-responsive NAC1. Protein Cell, 2011. 2(1): p. 55-63 [PMID:21337010]