PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G40170.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 493aa    MW: 53125.7 Da    PI: 9.8417
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G40170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM86.35.9e-272754083128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknr...atksgyWkatgk 88 
                      pG+rF Ptd+el+ ++Lk+k + ++ ++++ + ik++d++k++  +L+      k+ +  wy Fs+r++ +++g r+ r   +t+ gyWk+   
  ONIVA03G40170.1 275 PGVRFTPTDQELIIHFLKPKYNLRDaMPTNIIvIKQLDVCKLNLDELHGdlgLGKSLDGAWYVFSPRSRYKERGVRPARgikTTAVGYWKSNSA 368
                      9*******************9988875554445**************9534322334459*****************996534779******** PP

              NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +v++ +ge++g  ++L++  g++p+g+ t+W m+eyr+
  ONIVA03G40170.1 369 EADVVDDDGEVIGRVNSLTLALGHQPRGKATHWRMKEYRI 408
                      **************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.406273449IPR003441NAC domain
SuperFamilySSF1019418.5E-31274448IPR003441NAC domain
PfamPF023654.7E-15275408IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MAAINPVAGE VAAATAKAPP PAMATVRAPL PANHYLPYHS ASAAGSYAAN TQSTSSPVSP  60
ASPAMISSSS SSLPPQQQRT WQPQPTTFSQ ANPGHAYQQD HLPAVAGRRF FPPPAMQMQY  120
YHQQPAGVAM VGSGHPMAAP VHSSPLATTS GSNHAVVPDA PPQEPAKRRR RNTAAAATAR  180
WGRGRPRGAT ASSAHSAPPP PPQQQPTTSA PAITAQRNDD VNQEDDNQSS KNSAEEAVVV  240
AGGEPPAATS TLAIVPRHGD VGDADRPVSP YSDIPGVRFT PTDQELIIHF LKPKYNLRDA  300
MPTNIIVIKQ LDVCKLNLDE LHGDLGLGKS LDGAWYVFSP RSRYKERGVR PARGIKTTAV  360
GYWKSNSAEA DVVDDDGEVI GRVNSLTLAL GHQPRGKATH WRMKEYRIPH LLRMKVVKLK  420
LNSRGGTYKR TAYSLFPLDE WVLCKLYHSF AYKQKGKCKV HEEGSKSDRG VQDLSIDDDR  480
KTCDIEANKP NGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-182584553171NO APICAL MERISTEM PROTEIN
1ut4_B2e-182584553171NO APICAL MERISTEM PROTEIN
1ut7_A2e-182584553171NO APICAL MERISTEM PROTEIN
1ut7_B2e-182584553171NO APICAL MERISTEM PROTEIN
4dul_A2e-182584553171NAC domain-containing protein 19
4dul_B2e-182584553171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0GVG70.0A0A0E0GVG7_ORYNI; Uncharacterized protein
STRINGONIVA03G40170.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131302130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.17e-23NAC domain containing protein 47