PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G38840.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 387aa    MW: 40578.9 Da    PI: 9.9356
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G38840.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30312370259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D y+WrKYGqK++kgs++pr+YYrC+s+ +Cp++k+ver+++dp ++ +tYe+eHnh 
  ONIVA03G38840.2 312 SDNYSWRKYGQKPIKGSPHPRGYYRCSSKkDCPARKHVERCRSDPAMLLVTYENEHNHA 370
                      69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.3E-9263309IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.7E-32303372IPR003657WRKY domain
PROSITE profilePS5081131.031306372IPR003657WRKY domain
SuperFamilySSF1182906.8E-27309372IPR003657WRKY domain
SMARTSM007742.7E-37311371IPR003657WRKY domain
PfamPF031062.0E-26313369IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDGVEEANMA AVESSKKLVA ILSKSGDPFR LMAAVAETDE AVSRFGKVVT ILSNRVGHAR  60
ARLGKRRSSP PVDPGCLMDH PLAAAASFPA PSNGRLHFSS SAATASPSPA TAAAASSAAN  120
VTPAVVDRSL FLETTLLDLN SRGAPAPAAS MAAAAKNSSK LAPAPMVNSS SSANHIQFQQ  180
PMKSFQFEQT PISDKFHIEM PRGVGGGGGK EVISFSFDNS VCTSSAATSF FTSISSQLIS  240
MSDAATNSAA AAAAPTTKKP SSCARKATAD DDAGGKCHCP KKKSVSISPP KPREKKVVTV  300
PAISDKVADI PSDNYSWRKY GQKPIKGSPH PRGYYRCSSK KDCPARKHVE RCRSDPAMLL  360
VTYENEHNHA QPLDLSVVQQ ATANPQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-203093721274WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629206.10.0protein WRKY1 isoform X2
TrEMBLA0A0E0GUZ90.0A0A0E0GUZ9_ORYNI; Uncharacterized protein
STRINGONIVA03G38840.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.13e-40WRKY DNA-binding protein 11