PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G36690.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 311aa    MW: 34190.5 Da    PI: 8.7148
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G36690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.21.9e-102272671055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      rrRR+riN ++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  ONIVA03G36690.1 227 RRRRERINGRLRILQKLVPNG-----TKVDISTMLEEAVRYVKFLQ 267
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-13215275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.716217266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-11221271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-11223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-8227267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.37E-7233271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSQDELQQPG QVQWTPAPEE KSEIAVQFFT APYPCQNGQL DHGEHHALGG IGACSSVHWQ  60
PDRGTCYWPP PLSGDGGGGS GSGSSGTGEG GYIGERCYYV GEPDVPIGLN LLVGDNDGAG  120
VVLRDAAPQA KRRTQAGHGG DLGRQKKKAR VSDKRKNSWP IEKIYRCNLH VIMHRNQESM  180
QSGSCSDNES NCSQVNRRKV DRVAGGGNGK VPARRRSATI AQSLYARRRR ERINGRLRIL  240
QKLVPNGTKV DISTMLEEAV RYVKFLQLQI KVEVQIVCHD QMLSSDELWM YAPIVYNGMD  300
LGIDLNISPP R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213229RRRSATIAQSLYARRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631804.11e-178transcription factor BHLH089-like isoform X1
RefseqXP_025879771.11e-178transcription factor BHLH089-like isoform X1
TrEMBLA0A0E0GU650.0A0A0E0GU65_ORYNI; Uncharacterized protein
STRINGONIVA03G36690.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144452123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-34bHLH family protein