PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G36300.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 270aa MW: 28453.8 Da PI: 7.2356

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G36300.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.5	5.8e-33	94	151	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+ ONIVA03G36300.1 94 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 151 8******************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.2E-34	78	152	IPR003657	WRKY domain
SuperFamily	SSF118290	1.18E-28	85	152	IPR003657	WRKY domain
PROSITE profile	PS50811	29.964	88	153	IPR003657	WRKY domain
SMART	SM00774	8.6E-39	93	152	IPR003657	WRKY domain
Pfam	PF03106	3.4E-26	94	151	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MMVPAALDLP VDVVGAAARE EEEEEEEAPA RSGDGGAAAA SSSSSGEPAA PDKRPAAAEA 60 APAAAATATA KKGQKRARQP RFAFMTKSEI DHLEDGYRWR KYGQKAVKNS PFPRSYYRCT 120 NSKCTVKKRV ERSSDDPSVV ITTYEGQHCH HTASFQRGVG GAAVAAHIHG AAAVALAEQM 180 SAFVSPPPQP HMLYGLPRLH PPSSETAVSC SMPTTTSLQE LNNGEGLQRP GYNNSPQAAV 240 TIAQRPPSPS VPPAVSFDKG LLDDIVPPGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-26	83	150	7	74	Probable WRKY transcription factor 4
2lex_A	2e-26	83	150	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY341859	0.0	AY341859.1 Oryza sativa (japonica cultivar-group) WRKY19 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631421.1	1e-144	probable WRKY transcription factor 57
Refseq	XP_015631422.1	1e-144	probable WRKY transcription factor 57
TrEMBL	A0A0E0GU12	0.0	A0A0E0GU12_ORYNI; Uncharacterized protein
STRING	ONIVA03G36300.2	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	2e-49	WRKY DNA-binding protein 57