PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G34330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 348aa MW: 38583.2 Da PI: 6.1071 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.6 | 1.5e-10 | 172 | 220 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq ONIVA03G34330.1 172 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 220 58**************************....899*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.16E-16 | 167 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.04E-11 | 167 | 224 | No hit | No description |
PROSITE profile | PS50888 | 15.447 | 169 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-16 | 169 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.1E-8 | 172 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-10 | 175 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MRTGTRGSCD LAVREQGKIG QQSDQCPGPN SGKEFLEVNW DSVALHQKMG YNSGAFGFQA 60 YPMVLEDREG LYRSPNGTFC QNIQLSDDHS SGAKRRKGID DHIALLNPSA SSRIQNVGDQ 120 QTEVSSQQER ISMEEDNQKS CSKMQSKEDS SDGDGTKEDY VHVRAKRGQA TNSHSLAERL 180 RRKKISERMK LLQDLVPGCS KITGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVNPELSFD 240 IEQILSKQMM LSQDRHLAFY GVDPGSSALV AHFNQGIMQP EMLCNVSNPA DVLQGTTIQD 300 ISTVNQIPAM WEGLQNIPHL NYNPGGAMAE GSTNNSGIYD PKFVKNYV |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00135 | DAP | Transfer from AT1G10120 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632666.1 | 0.0 | transcription factor bHLH74 | ||||
Refseq | XP_015632667.1 | 0.0 | transcription factor bHLH74 | ||||
Refseq | XP_025879964.1 | 0.0 | transcription factor bHLH74 | ||||
Refseq | XP_025879965.1 | 0.0 | transcription factor bHLH74 | ||||
TrEMBL | A0A0E0GT93 | 0.0 | A0A0E0GT93_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G34330.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6033 | 36 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 3e-54 | bHLH family protein |