PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G27380.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 752aa MW: 83785.7 Da PI: 7.3306

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G27380.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.7	2.1e-18	42	122	14	99
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++p +fa++++g s + l+++sg++W++ + +++ + vl++GWkeFv+ang++e+D ++F+++g s+f v +f+ ONIVA03G27380.1 42 ESMIVPSRFANNFNGH--ISEVVNLKSPSGKTWSIGV--ANSDTGeLVLRSGWKEFVDANGVQENDCLLFRYSGVSSF--DVLIFDP 122 45899***888666..6779***********..5555555*************************99999..8888875 PP
2	B3	36.5	8.8e-12	296	367	15	84
-EE--HHH.HTT---..--SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 15 rlvlpkkfaeehggkkeesktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 + ++ +fa ++ g+ + +++++e g +W v++ r +s++ + ++GW++F+++ngL + D+++F+l ONIVA03G27380.1 296 TVGVSPEFAGRYLGP-AMAREVVMERGGGggggDQWHVRFVRRESSRG-FHGTGWRRFARDNGLLAHDVCLFEL 367 556778888888444.45668999998778999*****65555555.6788*****************96 PP
3	B3	46.6	6.3e-15	417	495	17	99
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 ++p +fa++++g s ++ l+++sg++W++ + +++ + vl+ GWkeFv+ ng++egD ++ +++g s+f v +f+ ONIVA03G27380.1 417 TVPARFANNFNGH--ISEEVNLRSPSGETWSIVV--ANSDAGeLVLQPGWKEFVDGNGIEEGDCLLVRYSGVsSSF--DVLIFDP 495 6899*888666..6779***********..5555445*************************987877..8888875 PP
4	B3	37	6.1e-12	634	714	5	85
-..-HHHHT..T-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 5 ltpsdvlks..grlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 +s+v +s +++ ++ +fa ++ g ++ + +++le ++g +W v + +r++ ++++ ++GW++F+ +n+L + D+++F+l+ ONIVA03G27380.1 634 IHSSHVRSSkyCIVGVSPEFAGKYlGAVE-R--EVVLERaSRGGEWHVLFVHRQNTRGFY-GAGWRQFAGDNRLVAHDVCLFELT 714 4445554445599999******76563.3..6999998999***9999999986.77*****************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	8.83E-23	28	129	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.7E-22	29	125	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	15.002	29	123	IPR003340	B3 DNA binding domain
SMART	SM01019	9.9E-11	32	123	IPR003340	B3 DNA binding domain
CDD	cd10017	1.87E-18	40	121	No hit	No description
Pfam	PF02362	1.6E-15	42	121	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.8E-14	274	368	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.3E-13	274	367	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.45E-11	278	367	No hit	No description
SMART	SM01019	0.0095	280	387	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.898	282	384	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-9	296	367	IPR003340	B3 DNA binding domain
SMART	SM01019	0.023	412	496	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.4E-17	416	498	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.71E-16	417	501	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.04E-14	417	494	No hit	No description
Pfam	PF02362	6.8E-12	417	494	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.887	418	496	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.6E-16	624	741	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.87E-16	624	714	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.61E-12	628	713	No hit	No description
SMART	SM01019	0.0048	630	734	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.221	630	744	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.7E-9	642	714	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence Send to blast
MGMLKIGKNC SVCKEWQEHC YWSHMADDCK HFLTYMVGDF TESMIVPSRF ANNFNGHISE 60 VVNLKSPSGK TWSIGVANSD TGELVLRSGW KEFVDANGVQ ENDCLLFRYS GVSSFDVLIF 120 DPSGCEKATP HFVENRGFGR EEKSAGAEGG GRDGDKNGHH QHQLEMTPHK NSSSPCIIEM 180 KWGRNQSRLC IIDMYAAMGI IVVTTNIGTY MHERACLAEQ DHREEKKEGD DEDEDEDKDG 240 ENRYYFCRHG GRVTEYNLSK GDKEEISRVP VPVEPGNPVL VKVIHASHLL SSRYSTVGVS 300 PEFAGRYLGP AMAREVVMER GGGGGGGDQW HVRFVRRESS RGFHGTGWRR FARDNGLLAH 360 DVCLFELRLV DGAGAGDRLR RRPRPTMAVH VLRRARTAAF ARSGKNTATG AIWPTTTVPA 420 RFANNFNGHI SEEVNLRSPS GETWSIVVAN SDAGELVLQP GWKEFVDGNG IEEGDCLLVR 480 YSGVSSSFDV LIFDPSGCEK ASPHFVGSHG FGRAENSAGA EQGGRNGRRT PPIVDGDNGH 540 RHHLEMTLHR NSCRSIPRAC KRSLFSDETE AKENDGEDED EDVVAAAEGG RYGEYYFSRH 600 GRVAEYNLRK EDREEISRVP VPVQPGNPVF VQVIHSSHVR SSKYCIVGVS PEFAGKYLGA 660 VEREVVLERA SRGGEWHVLF VHRQNTRGFY GAGWRQFAGD NRLVAHDVCL FELTMVDAAA 720 GGSGNRRRRW SRRPTMTVHV LRRVRGRFVL LR

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence Send to blast

MGMLKIGKNC SVCKEWQEHC YWSHMADDCK HFLTYMVGDF TESMIVPSRF ANNFNGHISE  60
VVNLKSPSGK TWSIGVANSD TGELVLRSGW KEFVDANGVQ ENDCLLFRYS GVSSFDVLIF  120
DPSGCEKATP HFVENRGFGR EEKSAGAEGG GRDGDKNGHH QHQLEMTPHK NSSSPCIIEM  180
KWGRNQSRLC IIDMYAAMGI IVVTTNIGTY MHERACLAEQ DHREEKKEGD DEDEDEDKDG  240
ENRYYFCRHG GRVTEYNLSK GDKEEISRVP VPVEPGNPVL VKVIHASHLL SSRYSTVGVS  300
PEFAGRYLGP AMAREVVMER GGGGGGGDQW HVRFVRRESS RGFHGTGWRR FARDNGLLAH  360
DVCLFELRLV DGAGAGDRLR RRPRPTMAVH VLRRARTAAF ARSGKNTATG AIWPTTTVPA  420
RFANNFNGHI SEEVNLRSPS GETWSIVVAN SDAGELVLQP GWKEFVDGNG IEEGDCLLVR  480
YSGVSSSFDV LIFDPSGCEK ASPHFVGSHG FGRAENSAGA EQGGRNGRRT PPIVDGDNGH  540
RHHLEMTLHR NSCRSIPRAC KRSLFSDETE AKENDGEDED EDVVAAAEGG RYGEYYFSRH  600
GRVAEYNLRK EDREEISRVP VPVQPGNPVF VQVIHSSHVR SSKYCIVGVS PEFAGKYLGA  660
VEREVVLERA SRGGEWHVLF VHRQNTRGFY GAGWRQFAGD NRLVAHDVCL FELTMVDAAA  720
GGSGNRRRRW SRRPTMTVHV LRRVRGRFVL LR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	376	381	DRLRRR
2	377	383	RLRRRPR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108660	0.0	AK108660.1 Oryza sativa Japonica Group cDNA clone:002-148-F01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628568.1	0.0	B3 domain-containing protein Os03g0622200
Swissprot	Q10GM3	0.0	Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBL	A0A0E0GQL7	0.0	A0A0E0GQL7_ORYNI; Uncharacterized protein
STRING	ONIVA03G27380.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP562	34	179

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	3e-28	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]