PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G27270.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1134aa    MW: 128488 Da    PI: 9.0155
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G27270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.7e-16107188997
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       ++  + +++p+kf++++gg    s+t+ l +++g ++ vk+  + + ++++l+ GW+ Fv+a++++e+D+++F+++++s+f   v ++
  ONIVA03G27270.1 107 ANF-GHSMTIPNKFLDHFGGT--LSRTIELVSPKGIVYIVKV--TEHMNKTILQCGWEAFVDAHHIEENDSLLFRHIENSRF--EVLIL 188
                      334.456********888877..899****************..*********************************99999..66655 PP
2B361.51.4e-19320419198
                      EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                      f+ ++++s+v+++ ++lv+pk++a++h   + es+t+tl+   ++++W   + +rk +++y+l ++Wk+Fv++n++kegD+++F+l+  +  ef
  ONIVA03G27270.1 320 FVAIMKHSNVNSRrACLVIPKRYASAHF--PLESQTITLQRqGKNKKWYPMFYIRKDGSGYMLYGCWKKFVRDNHVKEGDMCIFHLTkFTgGEF 411
                      6677888888887788***********6..446779999985666****99977999999*************************874445666 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                        +v+++r
  ONIVA03G27270.1 412 GATVHLLR 419
                      66777666 PP
3B347.14.2e-15495573887
                      -HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   8 sdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                      s+v++    ++++ ++fa+++   +e+++tltl  +    W+vk+  r +sg   ++t+GW++Fv++n+L+  D+++F+l+++
  ONIVA03G27270.1 495 SNVGTDglYIIIFGRQFATRYL--PEGEQTLTLLMTGKSAWQVKM--RPRSGDaKMITTGWRHFVHDNHLQIEDICLFQLMND 573
                      4555551123466899**9994..345679***************..77777779************************9865 PP
4B357.42.7e-18609693598
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +  s +++++ +++p+kf++++ggk   s+t+ le+++g+++ vk+  +k+ ++ vl+ GW+ Fv+a++++e+D+++F+++++s+f   v +++
  ONIVA03G27270.1 609 M--SANFEHS-MIIPNKFLNQFGGK--ISRTVELESPKGNVYVVKV--SKHMNKAVLQCGWEAFVDAHQIEENDSLLFRHIENSRF--AVLILD 693
                      4..5556655.***********999..888****************..*********************************99999..777776 PP
5B343.84.5e-14821919399
                      EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
               B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                      +++++s+v+++ + lv+ k++a ++   +++s+t+tl+   ++r+W  k+ +rk + +y+l + W +Fv  n++kegD+++F+l+  + ++f+ 
  ONIVA03G27270.1 821 TTMKHSNVNSHhASLVIAKHYACAYF--PHTSQTITLKWhGKNRKWHPKFYIRKDQVGYILHGRWIDFVCHNHVKEGDICIFHLKnFNgRKFRA 912
                      678888888886789*******8996..456779999985788*******77888888*************************98666688888 PP

                      EEEEE-S CS
               B3  93 vvkvfrk 99 
                      +v+++r+
  ONIVA03G27270.1 913 TVHLLRE 919
                      8888875 PP
6B351.91.4e-1610371129898
                       -HHHHT..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..E CS
               B3    8 sdvlks..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr..sefelv 93  
                       s+v++    +++l ++fa+++  ++ e+ tltl +  +g+ W+vk+  r +sg   ++t GW++Fv++n L++ D+++F+l+++  ++  ++
  ONIVA03G27270.1 1037 SNVGTDglYIITLGRQFATRYL-PEGEQ-TLTLLTtGTGKAWQVKM--RPRSGDaRMFTLGWRDFVRDNLLQTEDICLFQLMKNseRGLAMK 1124
                       55555522345899*****993.33344.5555554999*******..777776689***********************997734455566 PP

                       EEEE- CS
               B3   94 vkvfr 98  
                       v+++r
  ONIVA03G27270.1 1125 VHIIR 1129
                       66666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-2097196IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-1898193IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.12598191IPR003340B3 DNA binding domain
CDDcd100174.83E-1599189No hitNo description
SMARTSM010199.9E-8101191IPR003340B3 DNA binding domain
PfamPF023622.3E-14106187IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-20312405IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-23314407IPR015300DNA-binding pseudobarrel domain
CDDcd100175.64E-22318419No hitNo description
PfamPF023629.1E-20320420IPR003340B3 DNA binding domain
SMARTSM010198.4E-8320422IPR003340B3 DNA binding domain
PROSITE profilePS5086313.197321421IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.5E-20480574IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-17481574IPR015300DNA-binding pseudobarrel domain
CDDcd100176.73E-13486577No hitNo description
PROSITE profilePS5086310.095488583IPR003340B3 DNA binding domain
SMARTSM010190.0035488583IPR003340B3 DNA binding domain
PfamPF023629.7E-14492573IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-20600697IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-21601701IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.647602695IPR003340B3 DNA binding domain
CDDcd100171.67E-16603693No hitNo description
SMARTSM010192.5E-9605695IPR003340B3 DNA binding domain
PfamPF023623.2E-16610693IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-17811915IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.07E-18814915IPR015300DNA-binding pseudobarrel domain
CDDcd100172.98E-18817908No hitNo description
SMARTSM010190.0017819920IPR003340B3 DNA binding domain
PfamPF023624.9E-13820919IPR003340B3 DNA binding domain
PROSITE profilePS5086310.729820920IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-2110221131IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-1910231131IPR015300DNA-binding pseudobarrel domain
CDDcd100171.93E-1310281129No hitNo description
PROSITE profilePS5086312.50610301131IPR003340B3 DNA binding domain
SMARTSM010192.5E-910301131IPR003340B3 DNA binding domain
PfamPF023626.2E-1510341129IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1134 aa     Download sequence    Send to blast
MAQGPTYSPV FPFLLTSFFF PSYCHSPGRR WRRSGRQRAG EAVGGGRSYL AAQEGAETGL  60
NELARPRGRF TCMAGQGSQK KKSCDWSKRY VDHLNGKMKC FHLQMSANFG HSMTIPNKFL  120
DHFGGTLSRT IELVSPKGIV YIVKVTEHMN KTILQCGWEA FVDAHHIEEN DSLLFRHIEN  180
SRFEVLILDS DGCEKVFTCA GIKKTSSVQE RNAAPVDISR STHDETTQSS GSKKIVRCQR  240
ASDSQRGKTA KLAETSSSGE SGEEGTDSST SEDESSYELD DPQMPPGRNY VLSRWTSLSE  300
AQEEKVDMLV QDIQPEIPVF VAIMKHSNVN SRRACLVIPK RYASAHFPLE SQTITLQRQG  360
KNKKWYPMFY IRKDGSGYML YGCWKKFVRD NHVKEGDMCI FHLTKFTGGE FGATVHLLRE  420
TKSGSLGSFH TSHKRFDLRD GRTWPKVTGV RRVSSRPYLT ADRVSLTEEQ VRKVEEVVHS  480
IQSEGPMYVS IMNKSNVGTD GLYIIIFGRQ FATRYLPEGE QTLTLLMTGK SAWQVKMRPR  540
SGDAKMITTG WRHFVHDNHL QIEDICLFQL MNDEIHMAGQ GSQMKKYCDC CKRYVDHSNG  600
KMKCFHRQMS ANFEHSMIIP NKFLNQFGGK ISRTVELESP KGNVYVVKVS KHMNKAVLQC  660
GWEAFVDAHQ IEENDSLLFR HIENSRFAVL ILDSDGCEKV FSCSGKRRAS GVQQRNADPI  720
DVSSSTHDDT AQSSGGERFA RSESGSETAK LAATCSSGGS GEEAKESSSS EHESSYDLVD  780
PQIAPMPGYV LSRGTNLSQA HEEKLDMLVQ EIRPEIPLYV TTMKHSNVNS HHASLVIAKH  840
YACAYFPHTS QTITLKWHGK NRKWHPKFYI RKDQVGYILH GRWIDFVCHN HVKEGDICIF  900
HLKNFNGRKF RATVHLLRET IPHSFGALHI PKRFESRNGR MRLKMTDDRR VSSTECRRGT  960
MEPSTTNVKK EADNEQCNNG QGKRQEPLNF DVSVGSSKPY LTADRVSLTE EQFMKVEENV  1020
HSIQSEGPIY VSIMNKSNVG TDGLYIITLG RQFATRYLPE GEQTLTLLTT GTGKAWQVKM  1080
RPRSGDARMF TLGWRDFVRD NLLQTEDICL FQLMKNSERG LAMKVHIIRH NERS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004510.0AK100451.1 Oryza sativa Japonica Group cDNA clone:J023090P20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630232.20.0LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0620500-like
SwissprotQ851W40.0Y3205_ORYSJ; B3 domain-containing protein Os03g0620500
TrEMBLA0A0E0GQK30.0A0A0E0GQK3_ORYNI; Uncharacterized protein
STRINGONIVA03G27270.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-18B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]