PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G16920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 392aa MW: 42172.6 Da PI: 8.814 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.9 | 4.7e-54 | 9 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+v+yL+++++++++++ ++i++vdiyk++PwdLp+k++ +++ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++s ONIVA03G16920.1 9 LPPGFRFHPTDEELIVHYLRNRAASSPCPV-SIIADVDIYKFDPWDLPSKANYGDREWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIHS 101 79****************************.89***************999999**************************************** PP NAM 95 k....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++e vg+kk Lvfykgr pkg+kt+W+mheyrl ONIVA03G16920.1 102 SggaaTNESVGVKKALVFYKGRPPKGTKTNWIMHEYRL 139 977776777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.29E-64 | 5 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.853 | 9 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-27 | 10 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MVLSNPAMLP PGFRFHPTDE ELIVHYLRNR AASSPCPVSI IADVDIYKFD PWDLPSKANY 60 GDREWYFFSP RDRKYPNGIR PNRAAGSGYW KATGTDKPIH SSGGAATNES VGVKKALVFY 120 KGRPPKGTKT NWIMHEYRLA AADAHAANTY RPMKFRNTSM RLDDWVLCRI YKKSSHASPL 180 AVPPLSDHEQ DEPCALEENA PLYAPSSSSA ASMILQGAAA GAFPSLHAAA AATQRTAMQK 240 IPSISDLLNE YSLSQLFDDG GAAAAAPLQE MARQPDHHHH HQQQHALFGH PVMNHFIANN 300 SMVQLAHLDP SSSAAPSTSA GAVVEPPAVT GKRKRSSDGG EPTIQALPPA AAAAKKPNGS 360 CVGATFQIGS ALQGSSLGLS HQMLLHSNMG MN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-73 | 9 | 177 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-73 | 9 | 177 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-73 | 9 | 177 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-73 | 9 | 177 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-73 | 9 | 177 | 20 | 172 | NAC domain-containing protein 19 |
3swm_B | 2e-73 | 9 | 177 | 20 | 172 | NAC domain-containing protein 19 |
3swm_C | 2e-73 | 9 | 177 | 20 | 172 | NAC domain-containing protein 19 |
3swm_D | 2e-73 | 9 | 177 | 20 | 172 | NAC domain-containing protein 19 |
3swp_A | 2e-73 | 9 | 177 | 20 | 172 | NAC domain-containing protein 19 |
3swp_B | 2e-73 | 9 | 177 | 20 | 172 | NAC domain-containing protein 19 |
3swp_C | 2e-73 | 9 | 177 | 20 | 172 | NAC domain-containing protein 19 |
3swp_D | 2e-73 | 9 | 177 | 20 | 172 | NAC domain-containing protein 19 |
4dul_A | 2e-73 | 9 | 177 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-73 | 9 | 177 | 17 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00333 | DAP | Transfer from AT3G04070 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243514 | 0.0 | AK243514.1 Oryza sativa Japonica Group cDNA, clone: J100075D15, full insert sequence. | |||
GenBank | JN982313 | 0.0 | JN982313.1 Oryza sativa Japonica Group NAC transcription factor 58 (NAC58) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632401.1 | 0.0 | NAC transcription factor 47 | ||||
Swissprot | Q8H4S4 | 6e-87 | NAC10_ORYSJ; NAC domain-containing protein 10 | ||||
TrEMBL | A0A0E0GLU4 | 0.0 | A0A0E0GLU4_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G16920.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 4e-86 | NAC domain containing protein 47 |
Publications ? help Back to Top | |||
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