PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G15770.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 109aa MW: 12610.3 Da PI: 10.1863

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G15770.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.4	1.4e-12	33	78	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 +WT+eEd l ++ + G+++W+++a+ m+ +R++ qc++rw+++l ONIVA03G15770.1 33 AWTPEEDAVL-RLAMENGSRHWRRVAAQMPrRRRSPAQCRDRWRDHL 78 7***9877.5667899999*********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.006	26	82	IPR017930	Myb domain
SMART	SM00717	4.3E-7	30	80	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.94E-14	33	103	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.7E-16	33	95	IPR009057	Homeodomain-like
CDD	cd00167	5.81E-9	33	78	No hit	No description
Pfam	PF13921	7.2E-12	34	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
MDMELSSSST TVASSPASPL LGRCVVRIRL PPAWTPEEDA VLRLAMENGS RHWRRVAAQM 60 PRRRRSPAQC RDRWRDHLAR DVFHRHFTSA DDTELARLCL HLDDAGHRW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629497.1	9e-71	transcription factor MYB44-like
TrEMBL	A0A0E0GLF8	7e-72	A0A0E0GLF8_ORYNI; Uncharacterized protein
STRING	ONIVA03G15770.1	1e-72	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8360	13	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	3e-07	myb domain protein r1