PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G12000.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 482aa    MW: 53404.4 Da    PI: 4.9022
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G12000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.65.8e-12137172338
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
           SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevavi 38 
                      ie+++ r+ t+skRr g++K A+ LS L+da va+ 
  ONIVA03G12000.1 137 IEEDRDRSLTLSKRRDGLFKLANDLSLLTDASVAIC 172
                      99*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-6126185IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-5129149IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-13131196IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.456134171IPR002100Transcription factor, MADS-box
PfamPF003191.3E-11137174IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-5149164IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-5164185IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MESQICQFGT FLEVNNQHSA TPKGKTIPVK CTDCLPGVAS RSLTVIPLEV PHDVLLSARE  60
AKTQYNSTFE HNLSETNFVT GTDNGAHHAN VKDVPPDIYE TEFRHQFPRI ETSFSIIGAH  120
FLSSMVRRGR RKGVRYIEED RDRSLTLSKR RDGLFKLAND LSLLTDASVA ICLHDSNKAQ  180
FFGAPSVKPV VDAFVSEAEP FADEQLKAKL TSMQSELVQL ENEEEEKDKK TEESIQRFKE  240
AQEESLGMGM AKHLFSRLED LSHDDMRELL DVLLPLQQDF KKRLPPLRRG SKLQIGGSSA  300
WAHQQPSCSR FLASHRPFTP LLPGGTSGVP MIPPPPVPGS PWSQIFPLRP PLFPSPELVP  360
SQQLPPVSPP QNTVAPPPMH APLVQQPLTN QSSAVPLLTQ WQMRFGDQPP AEVQACTPVE  420
QPQNDNAVHT PTFSDSFLLE LLADVSDDGI ATAEPLCSPP IDDQFLADID WLAELDTIDG  480
NL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037420.0AP003742.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1118_D07.
GenBankAP0043380.0AP004338.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0507H12.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882749.10.0uncharacterized protein LOC107277131
TrEMBLA0A0E0GK070.0A0A0E0GK07_ORYNI; Uncharacterized protein
TrEMBLA0A0E0Q3R00.0A0A0E0Q3R0_ORYRU; Uncharacterized protein
STRINGORUFI07G02010.10.0(Oryza rufipogon)
STRINGONIVA03G12000.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP155501117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.17e-09AGAMOUS-like 64