PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G07980.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 340aa    MW: 36444.4 Da    PI: 5.65
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G07980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.5e-112643041055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  ONIVA03G07980.1 264 RKRRERINERLKILQNLIPNG-----TKVDISTMLEEAVHYVKFLQ 304
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.856254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-13257317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-12259313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-12263308No hitNo description
PfamPF000104.8E-8264304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MESSEASWHS FDPSVAMEDS EAMAQLLGVQ YFGNDQEQQQ PAAAAPPAMY WPAHDAADQY  60
YGSAPYCYMQ QQQHYGCYDG GAMVAGGDFF VPEEQLVADP SFMVDLNLEF EDQHGGDAGG  120
AGSSAAAAAA ATKMTPVCKR KVEDHKDESC TDNVARKKAR STAATVVQKK GNKNAQSKKA  180
QKGACSRSSN QKESNGGGDG GNVQSSSTNY LSDDDSLSLE MTSCSNVSSA SKKSSLSSPA  240
TGHGGAKARA GRGAATDPQS LYARKRRERI NERLKILQNL IPNGTKVDIS TMLEEAVHYV  300
KFLQLQIKLL SSDDMWMFAP IAYNGVNVGL DLKISPPQQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235680.0AC123568.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1345H02, from chromosome 3, complete sequence.
GenBankAC1322140.0AC132214.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0040M05, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629469.10.0transcription factor bHLH85
TrEMBLA0A0E0GII40.0A0A0E0GII4_ORYNI; Uncharacterized protein
STRINGONIVA03G07980.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116802832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-45bHLH family protein