PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G06360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 298aa MW: 31864 Da PI: 6.5073 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.7 | 9.5e-21 | 112 | 162 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a++ a+ +l+ge ONIVA03G06360.1 112 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDSAAFRLRGE 162 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.89E-35 | 111 | 171 | No hit | No description |
PROSITE profile | PS51032 | 23.696 | 112 | 169 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-33 | 112 | 170 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-23 | 112 | 170 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.1E-39 | 112 | 175 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.7E-15 | 113 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 113 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 135 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MATTVDWCGR GSNLPAAMYD MVVDSKELMG ALAPSMVSFS YPCSEQSASS LLAGANYLTP 60 AQVLHVQAQL QRLRRPGAAS GCLAAAPPLP MKRHGAVAVA AAAAAARAPV KLYRGVRQRH 120 WGKWVAEIRL PRNRTRLWLG TFDTAEEAAL AYDSAAFRLR GESARLNFPE LRRGGAHLGP 180 PLHAAVDAKL HAICHGMDLP QPQPQTQSNA TTTTMSTTAT NTPSPFFSSE SPVVKSEPVC 240 SASESSSSAD GDVSSTGSSD VVPEMQLLDF SEAPWDESES FLLHKYPSLE IDWDAILS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-21 | 108 | 169 | 1 | 63 | ATERF1 |
3gcc_A | 8e-21 | 108 | 169 | 1 | 63 | ATERF1 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00585 | DAP | Transfer from AT5G65130 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629130.1 | 0.0 | ethylene-responsive transcription factor RAP2-13 | ||||
TrEMBL | A0A0E0GHW0 | 0.0 | A0A0E0GHW0_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2XDF6 | 0.0 | A2XDF6_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA03G06360.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 4e-43 | related to AP2 4 |