PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G06110.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 340aa    MW: 36402.9 Da    PI: 4.2926
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G06110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-17103152255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp+    +  r++lg+f  ae Aa a++ a+++++g
  ONIVA03G06110.1 103 QYRGVRRRP-WGKWAAEIRDPV----KgIRVWLGTFTNAEAAALAYDDAARAIRG 152
                      69*******.**********75....44***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.81E-16102160No hitNo description
PROSITE profilePS5103223.393103160IPR001471AP2/ERF domain
SMARTSM003804.9E-34103166IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-21103161IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-30103161IPR001471AP2/ERF domain
PfamPF008474.5E-10103152IPR001471AP2/ERF domain
PRINTSPR003672.1E-12104115IPR001471AP2/ERF domain
PRINTSPR003672.1E-12142162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MCGGAILAEL IPSAPAARRV TAGHVWPGDA NNAKKKGARA DDFEAAFRDF DNDSDDEEMM  60
LEEAEEEEAT SEHKPFVFRA KKARKAAAAA AAAASSRRRK PAQYRGVRRR PWGKWAAEIR  120
DPVKGIRVWL GTFTNAEAAA LAYDDAARAI RGDRAKLNFP SATTPDTRKR GRATAAAAPA  180
VKATPVINLV EEEDEEEEVA AAMASIKYEP ETSESSESNA LPDFSWQGMS ASDEFAVAAA  240
ALSLDSDDDL AKKRPRTEPE DTTTTTDSGS GDDTDALFDA LLFADQYNYF NGGAYESLDS  300
LFSADAVQTT AAAAAADQGM GLWSFDDGCC LVDVEASLSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20100160263ATERF1
3gcc_A1e-20100160263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197109RRKPAQYRGVRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632219.11e-156ethylene-responsive transcription factor ERF073
TrEMBLA0A0E0GHT20.0A0A0E0GHT2_ORYNI; Uncharacterized protein
STRINGONIVA03G06110.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-16ERF family protein