PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G06100.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 321aa    MW: 33763.3 Da    PI: 4.8231
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G06100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-1891141155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y GVr+++ +g+W+AeIrdp+e     r++lg+f tae Aa a++aa++ l+g
  ONIVA03G06100.1  91 SKYWGVRRRP-WGKWAAEIRDPVE---GVRVWLGTFATAEAAAHAYDAAARDLRG 141
                      79********.**********866...3************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-1191141IPR001471AP2/ERF domain
CDDcd000181.75E-1491148No hitNo description
SuperFamilySSF541716.54E-2291150IPR016177DNA-binding domain
SMARTSM003804.7E-3392155IPR001471AP2/ERF domain
PROSITE profilePS5103223.47292149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3092151IPR001471AP2/ERF domain
PRINTSPR003673.1E-993104IPR001471AP2/ERF domain
PRINTSPR003673.1E-9115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MCGGAILANI IPATPPRRAT AAHVWPGGDG EKRRKVGGGG CDDDFEAAFE RFGREDSEME  60
EEEVEEVVVG KKAAVRRRRA APAAGRRARP SKYWGVRRRP WGKWAAEIRD PVEGVRVWLG  120
TFATAEAAAH AYDAAARDLR GATAKLNFPS SSSSTAATPR PRKCRPTTAT ATPKATTPNV  180
VVVVNLVDKE AEASESSGAS SSALPDFSWQ GMSASSDDDA AAQQALLDAA GGAKKRPRSE  240
PHVTSDDEVL PASFDSDNNT AAAGLLPLDD PFLFGDQFGD LNGGAFASLM DGLFAAGEAN  300
VAGESVGLWS FGDDCLNASY Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-18881531076Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0796330.0AC079633.9 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G08, from Chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630586.10.0ethylene-responsive transcription factor ERF073
TrEMBLA0A0E0GHT10.0A0A0E0GHT1_ORYNI; Uncharacterized protein
STRINGONIVA03G06100.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.16e-18ERF family protein