PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G06070.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 326aa    MW: 35821 Da    PI: 6.1932
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G06070.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-18120170155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GVr+++ +gr++AeIrdp++    +r++lg++g+aeeAa a+++ +++++g
  ONIVA03G06070.2 120 SKYRGVRRRP-SGRFAAEIRDPKK---GRRVWLGTYGSAEEAAVAYDREARRIRG 170
                      89********.7*********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.47E-28120178No hitNo description
SuperFamilySSF541711.31E-20120179IPR016177DNA-binding domain
PfamPF008471.8E-11120170IPR001471AP2/ERF domain
PROSITE profilePS5103221.865121178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-28121178IPR001471AP2/ERF domain
SMARTSM003806.4E-32121184IPR001471AP2/ERF domain
PRINTSPR003673.2E-7122133IPR001471AP2/ERF domain
PRINTSPR003673.2E-7144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MCGGAILADF TPARVPRRLT AAELLPVTPT PPAAERRTTR KRKSDVDFEA EFELFEDDDD  60
DDEFELSDDG DESLAVSCVS SPKSKAVPSF SFSSDVSSSS RPRRRVAAAA AGRRKASKKS  120
KYRGVRRRPS GRFAAEIRDP KKGRRVWLGT YGSAEEAAVA YDREARRIRG KGARLNFPRD  180
GDGSPRRSND RPCWTIDLNL PAAAVSGDDD DAMAVDAADA DAGSAGRAAA YADQEALSAA  240
KCKIKQCPRD EQMASATPEL MEEDASSSRN MVPLSMALQL QYAAMIAECD REMEEIAAVE  300
RDLERRRRQV FERRGHLVRQ ASLLLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-19117178163ATERF1
3gcc_A3e-19117178163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13843TRKRKS
2113128RKASKKSKYRGVRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3048400.0AJ304840.1 Oryza sativa mRNA for ethylene responsive protein (ebp-89 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632275.10.0ethylene-responsive transcription factor RAP2-12
TrEMBLA0A0E0GHS80.0A0A0E0GHS8_ORYNI; Uncharacterized protein
STRINGONIVA03G06070.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136642229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.13e-22ERF family protein