PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G01360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 136aa MW: 15635.6 Da PI: 9.1153 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 56.7 | 8e-18 | 6 | 75 | 55 | 127 |
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 + w++F ++++ +r r+t sgyWk+ gk v+s++++ vglkk++ fy+g +p+g+kt+W ++e+ ONIVA03G01360.1 6 GEPWFYFRHHERWM---HRMDRSTPSGYWKTAGKASFVYSADRHPVGLKKSMLFYRGPEPSGRKTKWKIDEFW 75 45799999888865...69****************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 22.009 | 1 | 114 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.4E-18 | 6 | 86 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-7 | 7 | 74 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MGAGAGEPWF YFRHHERWMH RMDRSTPSGY WKTAGKASFV YSADRHPVGL KKSMLFYRGP 60 EPSGRKTKWK IDEFWALDNA ANGSEELLAQ LCRSRQNVGL MPRFPLSLCR LYSTKSSSER 120 HVLTTSSDEI SEDESD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135644 | 1e-164 | AC135644.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0085H07, complete sequence. | |||
GenBank | AP014967 | 1e-164 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615335.1 | 1e-89 | disease resistance protein RGA5-like isoform X1 | ||||
Refseq | XP_015615336.1 | 1e-89 | disease resistance protein RGA5-like isoform X1 | ||||
TrEMBL | A0A0E0GG10 | 2e-97 | A0A0E0GG10_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G01360.1 | 4e-98 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP26899 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-21 | NAC domain containing protein 90 |