PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G01340.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 1389aa    MW: 156929 Da    PI: 7.3322
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G01340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.79.8e-2311271188159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY    1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                       +dDg++W KYGqK++ g+ +prsY+rC ++   gC ++k+v+ +++d ++++++Y geH+++
  ONIVA03G01340.1 1127 VDDGFSWVKYGQKDILGTMYPRSYFRCIHRqtkGCLATKQVQPTDDDHQILDVIYYGEHTCD 1188
                       59**************************998889**************************97 PP
2WRKY78.76.4e-2512481309159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY    1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                       ldDgy+WrKYG K++ g+++prsY+rCt++   gC ++k+++r + dp +++++Y+g+H+++
  ONIVA03G01340.1 1248 LDDGYSWRKYGLKDILGAKYPRSYFRCTHRntqGCVATKQIQRRDGDPLLFDVVYHGDHTCS 1309
                       59***************************98889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147983.90E-132132No hitNo description
SuperFamilySSF525401.14E-49255555IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.4E-12276472IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.7E-10279368IPR002182NB-ARC
PRINTSPR003645.7E-10291306No hitNo description
PfamPF009311.5E-33397581IPR002182NB-ARC
PRINTSPR003645.7E-10489503No hitNo description
SuperFamilySSF520581.53E-24620995IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.105.7E-19715856IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003645.7E-10845861No hitNo description
Gene3DG3DSA:3.80.10.105.7E-19900946IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5081119.47411221190IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.7E-2311221189IPR003657WRKY domain
SuperFamilySSF1182905.36E-2211251189IPR003657WRKY domain
SMARTSM007747.8E-3611271189IPR003657WRKY domain
PfamPF031067.2E-2311281188IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.9E-2612351309IPR003657WRKY domain
SuperFamilySSF1182903.27E-2312421309IPR003657WRKY domain
PROSITE profilePS5081121.06912431306IPR003657WRKY domain
SMARTSM007741.8E-3712481310IPR003657WRKY domain
PfamPF031061.5E-2312491308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1389 aa     Download sequence    Send to blast
MEGTVFNLPG RLEELLCHHG SMLPKGADEE IPLIKQDLEE IISILHGHSE PKLEDHGMVV  60
RCWMKEVREL SYDIEDSIDQ YKHAARSQNR PNIRHRKFNR WRGNKIPCIP QKLKQRLWMA  120
NKIREFSLRA QEALQRHAMY NNLGGVASTA STTRGDVCSA TPLHPTQTQF REHVDNVRSV  180
SIEADGMEAA LNDLNKLKNL LAGIPTASLV QFREHADKVR GIHTDIEAIL NKLENIPPGI  240
TITTTTRGDV SSTSSRQPTR FMESTCHVGI DAAMDQLENL IDVCGEEKLK VVSIVGVGGV  300
GKTTLANKLY HKLRWQFECW AFVRSSQKTD MRRLLINILS QVRPHQSPDN WKVHSLISSI  360
RTYLQDKRGC VCCLLSLISA LATIRPHLAK DIPPIKGFLI VIDDLWATST WDIIKCALPE  420
GNKSSRILTT TEIEDLALQS CSYDLKFIFK MIPFGEDDSR KLLFSIVFGS HSKCPPEVSE  480
TLYDIVRKCG GLPLAIVTVA SLLASQLDKL EQWDYINKSL GYSLMANPTL EGMKQLLNLC  540
YSNLPQHLKA CMLYLSMYQG DHIIWKDDLV NQWIAEGFIC ATEEHDKEEI SRGYFDELVG  600
RKIIQPVHID DSGEVLSCVV HHIVLNFVTY KSIEENFIIA IDHSQATIRF ADKVRRLSIH  660
FSNVEDAPPP TNMRLFQVRT IAFFGVLKYM PFIMEFRLIK VLFLHFLGDE DSTGIVDLTK  720
ISELVRLRYL KVTSNATVKL PTRLQGLQYL ETLKIDGKIS EVPSDIIHLP GLLHLTLPAK  780
TNLPTGISHV TSLRTIGYFD LSCNSVENLW RLGELTNLWD LQLTYSEIHS DNLKNNMKYL  840
GPILGKLRNL KSITLSADGS SCPDTLRIDR DTKTRIYVDG WSSVSSPPAL LQRFELLPCV  900
CIFSNLPNWI GQLGNLCILK IGIREVTSNN IDVLGVLPEL IVLSLYVHTK PAERIVFDNA  960
GFSILRYFKF ICSVAWMKFE VGAMPSLRKL KLGFDVHRAD QHDIIPVGIE HLSGLEEISA  1020
KIRVACSAHD HCKRFAESAL SNAFMMHPGR PSVNIRCVDW TFDGKDDDNV RTQEEEHRTL  1080
QKQHHTAKEG SNEKSPVKQR DPREGAHKSV DGRETLRRIR VKVSSTVDDG FSWVKYGQKD  1140
ILGTMYPRSY FRCIHRQTKG CLATKQVQPT DDDHQILDVI YYGEHTCDQS ARSDDRQPKS  1200
SRPAASSNLQ EPQQPGLEQS RPAAKRRRKT VRWKTQVRVS SVQDVGPLDD GYSWRKYGLK  1260
DILGAKYPRS YFRCTHRNTQ GCVATKQIQR RDGDPLLFDV VYHGDHTCSE RASLNEQVTW  1320
PRSSASSTEQ SSTITYTAAA GSVEDDEEGV TSATNFLSMD DMLDLGGGDV IDMDFPSFDF  1380
DAIDALLLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6s2p_N1e-3826863511347NRC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617274.10.0disease resistance protein RGA5-like
RefseqXP_025877036.10.0disease resistance protein RGA5-like
TrEMBLA0A0E0GG070.0A0A0E0GG07_ORYNI; Uncharacterized protein
STRINGONIVA03G01340.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27511933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-32WRKY family protein