PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G35680.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 1127aa    MW: 124007 Da    PI: 4.1622
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G35680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.31.2e-13101541128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgk.rknra....tk....sgyWk 84 
                      l pGf+F+P+ e+l++++L + +++++l ++ v+   d  ++ Pw L  ++ +++e+e yf  +      +g  r++++    t      g W 
  ONIVA02G35680.1  10 LSPGFKFNPSVEQLLCFFLLPYLQHRRLLVDGVVFLDDPASAPPWALLhRHGRGGEDEAYFIGPVPAGDGHGGwRQQQVsrtvTGggggGGKWI 103
                      579************************9998888888**********834555577799***999888876432333333334335555899*9 PP

              NAM  85 atgkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++ ++++  ++       +++  +   +L f+  ++ ++ +t Wvmhe+++
  ONIVA02G35680.1 104 KQRTERPRGEEepvvvfgGETFRWEEFSLNFHADERCRSGSTGWVMHEFAV 154
                      9988888777655555544444888899****99999999*********75 PP
2NAM48.62.7e-156477801127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevd..iykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk 88 
                      l pGf+F+P+d+ lv  +L + + + +l++     +++ +   + + Pw L  ++ +++e+e yf ++       g r+ r ++  g W ++ +
  ONIVA02G35680.1 647 LSPGFKFNPSDQMLVELFLLPYLIDGELPVRGLvfVEDDHlgGLPLPPWILLdRHGRGDEDEAYFVAPMGA--GDGARQVRsVAGGGKWVKQRS 738
                      579**********************9988866432444331146679****73444445558888887765..56889999788899**97765 PP

              NAM  89 ..dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                        + ev+++  +++  + k +L f++ ++++g +t Wvmhey 
  ONIVA02G35680.1 739 egKGEVVVApgGEAFLWEKFSLNFHRDDRRSG-STGWVMHEYI 780
                      223344444455566999*******8777776.9********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-273174IPR003441NAC domain
PROSITE profilePS5100522.62110174IPR003441NAC domain
PfamPF023654.9E-912153IPR003441NAC domain
SuperFamilySSF1019413.01E-26638787IPR003441NAC domain
PROSITE profilePS5100522.621647801IPR003441NAC domain
PfamPF023652.1E-11649780IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1127 aa     Download sequence    Send to blast
MATAAESQGL SPGFKFNPSV EQLLCFFLLP YLQHRRLLVD GVVFLDDPAS APPWALLHRH  60
GRGGEDEAYF IGPVPAGDGH GGWRQQQVSR TVTGGGGGGG KWIKQRTERP RGEEEPVVVF  120
GGETFRWEEF SLNFHADERC RSGSTGWVMH EFAVVPPAGS RVAATHTACR IAFTGHGQKR  180
KRVPDGYVFV DVHVQTAAAV APPLPMLSSY GEPPHEHFSD DHPPPHSYTY YTQEYQQFLP  240
AAEQSDQEQE YCAPVQQNFQ DYHVAAAEQT DQDYFYTEMI NQEQDYAYQQ QDYAYQQQQQ  300
HLFHGDFLAT SQQFLGQDHE VMFTGLGGGL VVSDNGEHAS AAAPATEPPV HDVFLETLVP  360
EPPENAYVDG AGESAMASAS SAGGAPLLEQ PFATPPQQFL DQEPAPAGLN DGGAMIYNNN  420
GDGEHDAAPA AQPPARYYSG PVPAVDSVFL DKMREYLMAD AKGLCRIDAP INNGEHAAAP  480
APAADDPLAA QHGHGDAPPL PVPPDAAELE RVVGHLLREV EDIIKVAAAG GYGGSSDKPL  540
SEFDKAQNQI LAKLMAVFNQ VAETEDGSVT MTVTAVRSGR QQLLWRELRT SLGEANLPSM  600
RLGEADPSLP SSGVSDLSLP ISGVVDPPLM GSGSRRPMAA AARSQGLSPG FKFNPSDQML  660
VELFLLPYLI DGELPVRGLV FVEDDHLGGL PLPPWILLDR HGRGDEDEAY FVAPMGAGDG  720
ARQVRSVAGG GKWVKQRSEG KGEVVVAPGG EAFLWEKFSL NFHRDDRRSG STGWVMHEYI  780
VSPPAGSAVA ASHRATHIAF TGHGQNRKRV PDGYVLVLDD AVPAAAAAAA PPPESEQSNQ  840
EEQEYAAYTD QIQQQCFVPE QQMSNQEYFP EAAAEQSNQQ FFVPAEEQSS HQLFLPAEEQ  900
SNQQFFMPAE EQSSHQFLPA EEQSNYQQFL PALEQMTQSN QEFAYGEQSQ CYIVPEQQQL  960
SNQEYAYSEQ SQCYILPEQQ QLSDQEYAYS EQSQCYILPE QQELSNQEAE YAFVCYDEQQ  1020
QQQQQSNQEA EYAFACYDEQ QQQQQYLHGD LTSWQEPFVT SSSSSSQQFL GQEQLLPDGL  1080
LLDGFGEISQ QQGDQEYAYC EESQCYIMPE QQQQSNQEAE FAFACYD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0GD690.0A0A0E0GD69_ORYNI; Uncharacterized protein
STRINGONIVA02G35680.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143261123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.13e-06NAC domain containing protein 47