PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G33860.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 284aa    MW: 32450.6 Da    PI: 9.7968
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G33860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85.2e-13107151348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       WT+eEde+l ++ k+   ++W ++ar+m+ gR++ +c+ rw+ +l
  ONIVA02G33860.1 107 EWTAEEDERLRRLAKENLFRQWWKVAREMP-GRSGDSCRARWRHHL 151
                      7*****************************.***********9886 PP
2Myb_DNA-binding22.82.1e-07159202348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++T+ +de lv++++  Gg  W++I+r +  gRt    ++rw +++
  ONIVA02G33860.1 159 PFTARDDEELVRLHRHTGGS-WRKISRSVY-GRTSAIMRDRWIQLR 202
                      79****************88.********9.****99999998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.424100155IPR017930Myb domain
SuperFamilySSF466893.33E-20102198IPR009057Homeodomain-like
SMARTSM007175.3E-10104153IPR001005SANT/Myb domain
PfamPF002498.3E-11107150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-17107159IPR009057Homeodomain-like
CDDcd001673.69E-10107151No hitNo description
SMARTSM007170.0016156204IPR001005SANT/Myb domain
PROSITE profilePS5129410.852157206IPR017930Myb domain
CDDcd001670.00203159201No hitNo description
PfamPF139215.4E-6160203No hitNo description
Gene3DG3DSA:1.10.10.603.8E-9160202IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEEEKEEIAI PAVPVDFFQL MIDGSSKQWR WGRRGESSNR SQWREERLLI EKMSMRKKMQ  60
LGRYPCSRCN QPRSRGGETS MATAAAAAAA AAAKCRCSRR RRLPEREWTA EEDERLRRLA  120
KENLFRQWWK VAREMPGRSG DSCRARWRHH LARDVYHRPF TARDDEELVR LHRHTGGSWR  180
KISRSVYGRT SAIMRDRWIQ LRRSGLVPDA AKTAENAGCP PPAADDSEYM GSEAESKSPP  240
PPPQQQQHPL ADVLASSLDS CTLASDATDP RDGILALDFA FMSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3osf_A1e-1210521511120MYB21
3osf_D1e-1210521511120MYB21
3osg_A1e-1210521511120MYB21
3osg_D1e-1210521511120MYB21
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624539.11e-123transcription factor MYB3R-5
TrEMBLA0A0E0GCH70.0A0A0E0GCH7_ORYNI; Uncharacterized protein
STRINGONIVA02G33860.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2205166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.13e-22myb domain protein r1